Pairwise Alignments

Query, 1155 a.a., transcription-repair coupling factor (RefSeq) from Shewanella amazonensis SB2B

Subject, 1172 a.a., transcription-repair coupling factor from Rhodopseudomonas palustris CGA009

 Score =  701 bits (1810), Expect = 0.0
 Identities = 431/1170 (36%), Positives = 639/1170 (54%), Gaps = 55/1170 (4%)

Query: 12   TPAKGRVSAVRLPGGVARALTLAEMTCSYAG-------TTLIVTSDTPTALVLEAELGYL 64
            TP K    A    G  A  L +A++  + A        +  ++  D P    L   L + 
Sbjct: 13   TPGKALTFANVAEG--AEGLIIADLARAVAAKPKAPAVSLTVICRDGPRMQQLARSLEFF 70

Query: 65   LKPRGIDICLFPDRETLPYDSFSPHQDLISQRLETLSNLERGKGR----LVIVPLTTLMV 120
                 +++  FP  +  PYD  SPH  +++QR+ TL+ L R  G     +V+  +   + 
Sbjct: 71   APD--LEVLQFPAWDCQPYDRVSPHAGILAQRVTTLAKLSRLTGSDKPLIVLTTVNAAVQ 128

Query: 121  RLPPKAFLAANVLILKKGDRYQLQQMRQHLVDTGYHLVEQVYEHGEFAIRGSILDIFPSG 180
            R+P +  +AA  L +  G+   +  +   L   GY     V E GE+A+RG ILD+FP+G
Sbjct: 129  RVPVREIIAAQALSVAPGNVVPMDSIVAWLEHNGYSRASTVREAGEYAVRGGILDLFPAG 188

Query: 181  ASEPLRIELFDDEVESIRHFDPETQRSSGEVDSIRMLPAREFPTDSQAIEGFRQRYRRTF 240
              +P+R + F D++ESIR FD ETQR+   +  + ++P  EF   ++ I  FR  Y   F
Sbjct: 189  LDQPVRFDFFGDQLESIRTFDAETQRTLHTMRGLDLVPVSEFQLVTETIRRFRMGYVAAF 248

Query: 241  ETVNNAAESVYQLVSRNLMPAGIENYLPLFFDDTATLFDYLPEELQIITTGALHQAAEHH 300
               +   + +Y  VS      G+E++LPLF +   TLFDYL +   +        AA   
Sbjct: 249  GAPH-PDDQLYAAVSEGRRHPGMEHWLPLFQERMDTLFDYL-KGTPVAIEPQSEDAARER 306

Query: 301  LGEIHSRYEDRQVDPLRP-------LLPPKTLYQTTEELFARFKLYPRIDLSG----DEG 349
              +I   Y+ R+    +P        LPP  LY T  E  AR +      L+     D+ 
Sbjct: 307  FKQIADYYDARREAMEQPGSGAIYKPLPPDRLYLTDSEWTARLEGVALARLTPFALPDDT 366

Query: 350  DKTLEAAPLPDIRANHKLKQPLESLANWAQGGQRIAFVAESEGRREALLELLGKAGLKPK 409
               ++A      RA      P  + +N       +A V   +  R+ ++  L   G + +
Sbjct: 367  SDVIDAGA----RAGRNFA-PERADSNVNVFETLVAHVYALQAARKKVVIALWSEGSRDR 421

Query: 410  LFGHLDEF----LASDSPHGLVVAP-------LAMGCQLKMGKSQLAVVCETELFGERVS 458
            +   L +     L S +    V A          +G +        AV+ E ++ G+R+ 
Sbjct: 422  MASMLKDHKLVALTSVNSWRTVQATPRNETMLAVVGLESGFETDAFAVITEQDVLGDRLV 481

Query: 459  QERRRDKQRQLSQDVLIKNLAELKVGQPVVHLEHGVGLYQGLETLDTGGLVAEYLKLEYA 518
            ++R+  K+     D  I  +  L  G  VVH+EHG+G + GL+TL+ GG   + ++L YA
Sbjct: 482  RQRKASKKL----DNFISEVTSLSTGDIVVHVEHGIGRFVGLQTLEVGGAPHDCVELHYA 537

Query: 519  GGDKLYVPVSALHLISRFAVGNDESAPLNRLGNESWSKAKRKAIEKIRDVAAELLDVYAR 578
               KL++PV  + L+SR+   +  S  L++LG   W   K K   +IR +A EL+ V A 
Sbjct: 538  NDTKLFLPVENIELLSRYG-SDGTSVELDKLGGSGWQARKAKLKNRIRQIAGELIKVAAE 596

Query: 579  REARPGDPCTLDEAEYAQFAQGFPFEETVDQETAIKAVIDDMCQPKAMDRLVCGDVGFGK 638
            R  R      +    Y +F   FP++ET DQ  AI A + D+ +   MDRLVCGDVGFGK
Sbjct: 597  RHLREAPKLPIQPQLYDEFCARFPYDETEDQLAAINAALGDLEKGTPMDRLVCGDVGFGK 656

Query: 639  TEVAMRAAFLAVSSGKQVVVLVPTTLLAQQHFENFKDRFADWPVRIEVMSRFRTAKEQQA 698
            TEVA+RAAF     GKQV V+VPTTLLA+QH + F +RF  +PV +   SR  +AKE   
Sbjct: 657  TEVALRAAFAVALDGKQVAVVVPTTLLARQHAKTFTERFRGFPVNVGQASRLVSAKELSQ 716

Query: 699  VLSAMGEGKVDIVIGTHKLLNTELNFESLGLLIIDEEHRFGVRQKERIKAMRANVDILTL 758
            V   + +G  DIV+GTH LL   + F+ LGL+I+DEE  FGV  KE++K +R+ V +LTL
Sbjct: 717  VKKGIADGTTDIVVGTHALLGKSIKFKDLGLVIVDEEQHFGVTHKEKLKQLRSEVHVLTL 776

Query: 759  TATPIPRTLNMAMSGMRDLSIIATPPAKRLAVKTFVREYDKATVREAILREILRGGQVYY 818
            +ATPIPRTL +AM+G+RDLSIIA+PP  RLAV+TFV  +D   +REA+LRE  RGGQ +Y
Sbjct: 777  SATPIPRTLQLAMTGVRDLSIIASPPVDRLAVRTFVAPHDPLMIREALLRERYRGGQAFY 836

Query: 819  LHNQVETIEKAAQDIRELLPEARVVTAHGQMRERELERVMSDFYHQRFNVLVCTTIIETG 878
            +  +++ + +    + + +PE +V  AHGQM    +E +MS FY  +F++L+ TTI+E+G
Sbjct: 837  VVPRIDDLAEVKDFLDKHVPEMKVAVAHGQMPPAVIEDIMSAFYDGKFDILLSTTIVESG 896

Query: 879  IDVPSANTILIDRADHFGLAQLHQLRGRVGRSHHQAYAYLMTPHPKLMTVDARKRLEAID 938
            +D+P+ANT+++ RAD FGLAQL+QLRGRVGRS  +AYA    P   + T  A +RL+ + 
Sbjct: 897  LDIPNANTLIVHRADMFGLAQLYQLRGRVGRSKLRAYALFTLPQHNI-TAQAERRLKVLQ 955

Query: 939  ALEDLGAGFMLATQDLEIRGAGELLGDEQSGHISKIGFSLYMEMLEGAVKALKQG--KEP 996
            +LE LGAGF LA+ DL+IRGAG LLG+EQSGHI ++GF LY +MLE A+  LK G   EP
Sbjct: 956  SLETLGAGFQLASHDLDIRGAGNLLGEEQSGHIKEVGFELYQQMLEEAITNLKAGIVDEP 1015

Query: 997  SLRQMLGAQCEIDLRIPALLPDDYVNDVNMRLSLYKRIAGCDTEKAVDEMKVELIDRFGL 1056
               +      +I + +P L+PDD+V D+++RLSLY+R+A  DT++ +D    EL DRFG 
Sbjct: 1016 VADRW---SPQITIGMPVLIPDDFVADLSVRLSLYRRLADLDTDEEIDNFAAELRDRFGP 1072

Query: 1057 LPDATRNLLTMTVQKHRATRLGATKIEMHGRGGSIEFGEEHRVDPGFIIGLLSSQPQVYR 1116
            LPD  R L  +   K    R    K++   +G  I F +     P  ++  +       +
Sbjct: 1073 LPDEVRYLFKIAAIKAYCRRANVEKVDAGPKGVVITFRDNAFAQPDKLVFFIKRHGDAAK 1132

Query: 1117 MDGPNKLRFTMPCETAKERLELLELLLEQL 1146
            +    K+ F    ET +ERL     +L+QL
Sbjct: 1133 VRPDMKVVFFQVWETPEERLMGTTDILKQL 1162