Pairwise Alignments

Query, 1155 a.a., transcription-repair coupling factor (RefSeq) from Shewanella amazonensis SB2B

Subject, 1155 a.a., transcription-repair-coupling factor Mfd from Phaeobacter inhibens DSM 17395

 Score =  686 bits (1769), Expect = 0.0
 Identities = 426/1135 (37%), Positives = 631/1135 (55%), Gaps = 70/1135 (6%)

Query: 14   AKGRVSAVRLPGGVARALTLAEMTCSYAGTTLIVTSDTPTALVLEAELGYLLKPRGIDIC 73
            A+  ++A   P G    L L E   S A   + V  D        A L +      + + 
Sbjct: 2    AQRAITAGGAPEGFDARLILKEAASSDA-PVVHVARDDKRMEATRAALAFFAPD--MPVI 58

Query: 74   LFPDRETLPYDSFSPHQDLISQRLETLSNL-ERGKGRLVIVPLTTLMV---RLPPKAFLA 129
             FP  + LPYD  SP+ D+ + R+ TL+ L  +  G+ V+  LTTL     R+P +  L 
Sbjct: 59   SFPGWDCLPYDRVSPNADIAAARMATLAALVHQMPGQFVL--LTTLNAATQRVPARQVLK 116

Query: 130  ANVLILKKGDRYQLQQMRQHLVDTGYHLVEQVYEHGEFAIRGSILDIFPSGASEPLRIEL 189
                + +   R   + +R +L   G+     V E G+FA+RG I+DI+P G S P+R++L
Sbjct: 117  DAAFVAEVDRRIDEEALRGYLTRMGFTKSPTVMEPGDFAVRGGIIDIYPPGQSGPVRLDL 176

Query: 190  FDDEVESIRHFDPETQRSSGEVDSIRMLPAREFPTDSQAIEGFRQRYRRTFETVNNAAES 249
            F D ++  R FDP TQR++ ++  + + P  E   D  A+  FRQ YR  F       + 
Sbjct: 177  FGDVLDGARRFDPATQRTTEKLSVVELAPVSEVILDEAAVTRFRQNYRIEFGAAGTD-DP 235

Query: 250  VYQLVSRNLMPAGIENYLPLFFDDTATLFDYLPEELQIITTGALHQAAEHHLGEIHSRYE 309
            +Y+ VS      GIE++LP F +   TLFDYLP+   +     +  A       I  +YE
Sbjct: 236  LYEAVSAGRKYQGIEHWLPFFHERLETLFDYLPQAT-VTLDDQVTPARLARWDSIVDQYE 294

Query: 310  DRQV--------DPLRPLLPPKTLYQTTEELFARFKLYPRIDLSGDEGDKTLEAAPLPD- 360
             R++        D +   +PP  LY   +   A           GD   + ++  PLP  
Sbjct: 295  TRKIAMAQKGRMDTVYKPVPPGLLYLDDDAWEAAI---------GDH--RVIQFHPLPQA 343

Query: 361  -----------IRANHKLKQPLESLANWAQGGQRI---------AFVAESEGRREALLEL 400
                       I  N   ++ LES++ +      I            + SEG RE L  L
Sbjct: 344  SGPGVIDAGGRIGRNFSPERQLESVSLFKSLADHIKARMQVGPVVVASYSEGARERLTGL 403

Query: 401  LGKAGLKPKLFGHLDEFLASDSPHGLVVAPLAMGCQLKMGKSQLAVVCETELFGERVSQE 460
            +   GL   +  +    +     H L V  L  G +       L V+ E ++ G+R+   
Sbjct: 404  IEDEGLAEVIAINDGTRIGKSGLH-LAVWALEHGFET----DDLTVISEQDVLGDRLI-- 456

Query: 461  RRRDKQRQLSQDVLIKNLAELKVGQPVVHLEHGVGLYQGLETLDTGGLVAEYLKLEYAGG 520
             R  K+R+ +++ L +  + L  G  VVH++HG+G Y+GLE +   G   E + LEYA  
Sbjct: 457  -RAPKKRRKAENFLTETQS-LSPGDLVVHVDHGIGRYKGLEVVTAAGAAHECILLEYAEH 514

Query: 521  DKLYVPVSALHLISRFAVGNDESAPLNRLGNESWSKAKRKAIEKIRDVAAELLDVYARRE 580
             KLY+PV  + L+S++  G+DE   L+RLG  +W   K K  E+IR++A  L+ V A R 
Sbjct: 515  SKLYLPVENIELLSKY--GHDEGL-LDRLGGGAWQAKKAKLKERIREMADRLIRVAAERA 571

Query: 581  ARPGDPCTLDEAEYAQFAQGFPFEETVDQETAIKAVIDDMCQPKAMDRLVCGDVGFGKTE 640
             R           + +F+  FP++ET DQ  AI  V++D+     MDRL+CGDVGFGKTE
Sbjct: 572  LRKAPMMDPPPHAWEEFSARFPYQETDDQLRAISEVMEDLQSGSPMDRLICGDVGFGKTE 631

Query: 641  VAMRAAFLAVSSGKQVVVLVPTTLLAQQHFENFKDRFADWPVRIEVMSRFRTAKEQQAVL 700
            VAMRAAF+A  SG QV ++ PTTLLA+QH   F  RF  +P+ +  +SRF TAKE     
Sbjct: 632  VAMRAAFIAAMSGVQVAIVAPTTLLARQHAAAFAQRFRGFPLEVRQLSRFVTAKEAAKTR 691

Query: 701  SAMGEGKVDIVIGTHKLLNTELNFESLGLLIIDEEHRFGVRQKERIKAMRANVDILTLTA 760
              M +G +DIV+GTH LL   + F++LGLLIIDEE  FGV  KER+K MR+++ +LTLTA
Sbjct: 692  EGMAKGTIDIVVGTHALLAKSVRFQNLGLLIIDEEQHFGVAHKERLKQMRSDIHVLTLTA 751

Query: 761  TPIPRTLNMAMSGMRDLSIIATPPAKRLAVKTFVREYDKATVREAILREILRGGQVYYLH 820
            TPIPRTL ++++G+RDLSII TPP  RLA++T+V E+D  T+REA+LRE  RGGQ +Y+ 
Sbjct: 752  TPIPRTLQLSLTGVRDLSIIGTPPVDRLAIRTYVSEFDAVTIREALLREHYRGGQSFYVV 811

Query: 821  NQVETIEKAAQDIRELLPEARVVTAHGQMRERELERVMSDFYHQRFNVLVCTTIIETGID 880
             ++  +      ++E LPE   V AHGQ+   +L+  M+ FY  +F+VL+ TTI+E+G+D
Sbjct: 812  PRITDLPDVEAFLQEQLPELSYVVAHGQLAAGDLDDRMNAFYDGKFDVLLATTIVESGLD 871

Query: 881  VPSANTILIDRADHFGLAQLHQLRGRVGRSHHQAYAYLMTPHPKLMTVDARKRLEAIDAL 940
            +P+ANT+++ RAD FGLAQL+Q+RGRVGRS  +AYAYL T     +T  A KRL  + +L
Sbjct: 872  IPTANTMVVHRADMFGLAQLYQIRGRVGRSKTRAYAYLTTKPRVRLTPGAEKRLRVLGSL 931

Query: 941  EDLGAGFMLATQDLEIRGAGELLGDEQSGHISKIGFSLYMEMLEGAVKALKQGKEPSLRQ 1000
            + LGAGF LA+QDL+IRGAG LLG+EQSG +  +G+ LY  MLE A+  +K G+   L  
Sbjct: 932  DTLGAGFSLASQDLDIRGAGNLLGEEQSGQMRDVGYELYQSMLEEAIAKIKSGE---LEG 988

Query: 1001 MLGAQ----CEIDLRIPALLPDDYVNDVNMRLSLYKRIAGCDTEKAVDEMKVELIDRFGL 1056
            + G+      +I+L +P L+P++YV D+++RL LY+R++   T+  ++    ELIDRFG 
Sbjct: 989  LSGSDDQWAPQINLGVPVLIPENYVPDLDVRLGLYRRLSDLSTKVELEGFAAELIDRFGA 1048

Query: 1057 LPDATRNLLTMTVQKHRATRLGATKIEMHGRGGSIEFGEEHRVDPGFIIGLLSSQ 1111
            LP     L+ +   K    R G  K++   +G +I+F  +    P  ++  + +Q
Sbjct: 1049 LPKEVNTLMLVVRIKAMCKRAGIAKLDGGPKGATIQFHNDKFASPQGLVEFIQAQ 1103