Pairwise Alignments

Query, 1155 a.a., transcription-repair coupling factor (RefSeq) from Shewanella amazonensis SB2B

Subject, 1197 a.a., transcription-repair coupling factor (RefSeq) from Desulfovibrio vulgaris Miyazaki F

 Score =  623 bits (1606), Expect = 0.0
 Identities = 381/1055 (36%), Positives = 584/1055 (55%), Gaps = 49/1055 (4%)

Query: 97   LETLSNLERGKGRLVIVPLTTLMVRLPPKAFLAANVLILKKGDRYQLQQMRQHLVDTGYH 156
            L  LS  E  +G  +I+ +  L+ +LPP      + L L +G+    + +    +D G+ 
Sbjct: 129  LYALSRREHPRG--IIISVDNLLPKLPPVDIFEHHELRLARGEDMSPELVLDQAIDWGFE 186

Query: 157  LVEQVYEHGEFAIRGSILDIFPSGASEPLRIELFDDEVESIRHFDPETQRSSGEVDSIRM 216
              + V   GE A RG ILDIFP G  +PLR+E F D +E IR FD  +QRS   ++  R+
Sbjct: 187  RAQMVSRPGEAARRGDILDIFPPGYEKPLRLEFFGDTLEDIRLFDATSQRSLASLEEFRL 246

Query: 217  LPAREFPTDSQAIEGFRQRYRRTFETVNNAAESVYQLVSRNLMPAGIENYLP-LFFDDTA 275
            LP        +  E   +R+++  +      E    L    +    +   LP  ++++  
Sbjct: 247  LPVAPVVGCREYREAAARRWKQLRKDGVIDGEQAAALA--RMAEGEVTGLLPGAWYENAT 304

Query: 276  TLFDYLPEELQIITTGALHQAAEHHLGEIHSRYE---DRQVDPLRPLLPPKTLYQTTEEL 332
             + D+LP +   +       +    L    + +E   DRQ D  R   P   + +  +E 
Sbjct: 305  WMEDWLPRDAVWLLPDRADLSTA--LEAARTNWEALLDRQYDEHRLRQPRPLVLRDADEA 362

Query: 333  FARFK---------LYPRIDLSG-DEGDKTLEA-------APLPDIRANHKLKQPLESLA 375
             A ++         L   ++ +G D  ++ L A        P   +  +   ++ + +L 
Sbjct: 363  QAAWRGRSVAHFERLVMGVERTGVDLPERRLHAFRDLFAATPSVPVDEDRPWQRLVTALR 422

Query: 376  NWAQGGQRIAFVAESEGRREALLELLGKAGLKPKLFGHLDEFLASDSPHGLVVAPLAMGC 435
             W    +++     S+  R   L+L  + G++P L      +  +D     +VAP   G 
Sbjct: 423  QWTSERRQVVLSFASDRSRRKFLKLAEQDGVRPNL-----RYSPADRGLYALVAPFRAGI 477

Query: 436  QLKMGKSQLAVVCETELFGERVSQERRRDKQRQLSQDVLI--KNLAELKVGQPVVHLEHG 493
             L              + GE V Q +  D+Q ++     +      +L  G  +VH ++G
Sbjct: 478  DLAWDN--------VLVIGEDVLQPKA-DRQPRVPTGAFLGLDKYDDLSPGDLLVHRDYG 528

Query: 494  VGLYQGLETLDTGGLVAEYLKLEYAGGDKLYVPVSALHLISRFAVGNDESAPLNRLGNES 553
            VG + GL  +D GG+  ++L LEYAG D+LY+PV  L LI RF  G+D    L++LG   
Sbjct: 529  VGRFGGLHRMDLGGVANDFLLLEYAGEDRLYLPVDRLSLIQRFKGGDDSVPSLDKLGGSG 588

Query: 554  WSKAKRKAIEKIRDVAAELLDVYARREARPGDPCTLDEAEYAQFAQGFPFEETVDQETAI 613
            W   K KA + I  +AA+L+ +YA R+   G         Y +F   F FEET DQ  AI
Sbjct: 589  WRACKDKARKAIEKIAADLVQMYAYRKVAKGYRYGPLGELYREFEASFGFEETPDQARAI 648

Query: 614  KAVIDDMCQPKAMDRLVCGDVGFGKTEVAMRAAFLAVSSGKQVVVLVPTTLLAQQHFENF 673
            + V+DDM +P+ MDRLVCGDVGFGKTEVA+RAAF A + G+QV +L PTT+LA+QH++ F
Sbjct: 649  QDVLDDMEKPEPMDRLVCGDVGFGKTEVALRAAFRAAAEGRQVALLCPTTVLAEQHYQTF 708

Query: 674  KDRFADWPVRIEVMSRFRTAKEQQAVLSAMGEGKVDIVIGTHKLLNTELNFESLGLLIID 733
            + R A +PV + ++SRF + ++Q+ VL A   G++DI+IGTH+LL+ ++   +LGLL++D
Sbjct: 709  RSRLAGFPVNVGMLSRFVSRQKQKEVLQAAARGQIDILIGTHRLLSDDVQLPNLGLLVLD 768

Query: 734  EEHRFGVRQKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPPAKRLAVKTF 793
            EE RFGVR KE++K  R NVD LTLTATPIPRTL ++MSG+R+LS+I T P +R  V T 
Sbjct: 769  EEQRFGVRHKEKLKKFRKNVDALTLTATPIPRTLQLSMSGIRELSVIETAPPERKPVATA 828

Query: 794  VREYDKATVREAILREILRGGQVYYLHNQVETIEKAAQDIRELLPEARVVTAHGQMRERE 853
            + E D+  +R+ + REI R GQV+++HN+V+ +E+ A+ +R L+P ARV  AHGQM ERE
Sbjct: 829  LIERDQNALRQILEREIAREGQVFWVHNRVQGLERVAEFVRGLVPTARVGMAHGQMGERE 888

Query: 854  LERVMSDFYHQRFNVLVCTTIIETGIDVPSANTILIDRADHFGLAQLHQLRGRVGRSHHQ 913
            LE  M  F+H   +VLVCT I+E+G+D P ANT+++D+A  FGL QL+QLRGRVGRS  Q
Sbjct: 889  LEDTMHKFWHGELDVLVCTAIVESGLDFPRANTLIVDQAQMFGLGQLYQLRGRVGRSDRQ 948

Query: 914  AYAYLMTPHPKLMTVDARKRLEAIDALEDLGAGFMLATQDLEIRGAGELLGDEQSGHISK 973
            AYA  +    + +   AR+R+  I  L+ LGAGF +A +DL +RGAG +LG+ QSGH+++
Sbjct: 949  AYAVFVVSDAERLPEQARQRMRIILELDYLGAGFQVAMEDLRLRGAGNILGEVQSGHMTR 1008

Query: 974  IGFSLYMEMLEGAVKALKQGKEPSLRQMLGAQCEIDLRIPALLPDDYVNDVNMRLSLYKR 1033
            +G  LY+EMLE  V  LK G  P        + E+++ + A +P+ Y+ D   RL  YK 
Sbjct: 1009 LGLDLYLEMLEEEVARLK-GAPP----RESVEPELNIGLAAHIPETYIGDARERLKFYKA 1063

Query: 1034 IAGCDTEKAVDEMKVELIDRFGLLPDATRNLLTMTVQKHRATRLGATKIEMHGRGGSIEF 1093
            ++       + ++++EL DRFG  P   RN L + V K     L   + ++H     + +
Sbjct: 1064 LSSAPDAATLQDVEMELRDRFGPCPPELRNFLAVLVLKRFLATLQVVRADIHPERLRLVW 1123

Query: 1094 GEEHRV-DPGFIIGLLSSQPQVYRMDGPNKLRFTM 1127
             E   V  P  ++  ++++    R+  P+ L   M
Sbjct: 1124 DERQTVIAPERLVAWVAARQGKARLVPPSTLEVRM 1158