Pairwise Alignments

Query, 1155 a.a., transcription-repair coupling factor (RefSeq) from Shewanella amazonensis SB2B

Subject, 1156 a.a., transcription-repair coupling factor from Lysobacter sp. OAE881

 Score = 1093 bits (2826), Expect = 0.0
 Identities = 579/1132 (51%), Positives = 780/1132 (68%), Gaps = 19/1132 (1%)

Query: 28   ARALTLAEMTCSYAGTTLIVTSDTPTALVLEAELGYLLKPRGIDICL--FPDRETLPYDS 85
            A A  +A    +++   L+V  D   A  LE++L  LL  +  ++ +  FPD ETLPYD 
Sbjct: 29   ALAFHVAAAASAHSAPLLVVARDNQGAHQLESDLHTLLGAQQTELPVIGFPDWETLPYDV 88

Query: 86   FSPHQDLISQRLETLSNLERGKGRLVIVPLTTLMVRLPPKAFLAANVLILKKGDRYQLQQ 145
            FSPH D++SQRL  L  L   K  +VIVP+ TL+ RL P   +      ++ G R  L  
Sbjct: 89   FSPHPDIVSQRLAALHRLPTLKRGIVIVPVQTLLQRLAPLKHVVGGSFDVRTGQRLDLDA 148

Query: 146  MRQHLVDTGYHLVEQVYEHGEFAIRGSILDIFPSGASEPLRIELFDDEVESIRHFDPETQ 205
             ++ L   GY  V QV + G+FA+RG +LD++P GA +P R+EL DDE+E+IR FDPE+Q
Sbjct: 149  EKRRLESAGYRHVPQVLDPGDFAVRGGLLDVYPMGADQPFRVELLDDEIETIRAFDPESQ 208

Query: 206  RSSGEVDSIRMLPAREFPTDSQAIEGFRQRYRRTFETVNNAAESVYQLVSRNLMPAGIEN 265
            RS  ++D++ +LP RE P    A++      R  F+ ++    ++YQ +   L P GIE 
Sbjct: 209  RSLEKIDAVHLLPGREVPLSDAALKRALDALRDRFD-LDTRRSALYQDLKAGLAPPGIEY 267

Query: 266  YLPLFFDDTATLFDYLPEE-LQIITTGALHQAAEH--HLGEIHSRYEDRQVDPLRPLLPP 322
            YLPLFFD T+TLFDYL  E L +I  GA+  A +   H GE   RYE R+ D  RPLLPP
Sbjct: 268  YLPLFFDTTSTLFDYLDAETLPVIADGAMEAADQFWTHTGE---RYEQRRHDLERPLLPP 324

Query: 323  KTLYQTTEELFARFKLYPRIDLSGD-----EGDKTLEAAPLPDIRANHKLKQPLESLANW 377
              LY   + L  R     R+++ G+     E    L   P P +    +   P ++L ++
Sbjct: 325  DALYLPPDALRERLNAGARVEVCGEGHAQRERASALGDQPAPSLPVAARDHAPADALTSF 384

Query: 378  AQGGQ-RIAFVAESEGRREALLELLGKAGLKPKLFGHLDEFLASD-SPHGLVVAPLAMGC 435
                  R+   A+S GRREALLE+L    LKP++      FLA+D S   + VAPL  G 
Sbjct: 385  LSSYPGRVLVAADSPGRREALLEILQAGALKPEVVADFPAFLANDASRFSIAVAPLDDGF 444

Query: 436  QLKMGKSQLAVVCETELFGERVSQERRRDKQRQLSQDVLIKNLAELKVGQPVVHLEHGVG 495
             +   +    V+ E +LF ER SQ RRR +  +   + +IK+L EL  G P+VH +HGVG
Sbjct: 445  AIT--EPAFVVLTERQLFPERASQPRRRRRVGR-EPEAIIKDLGELTEGAPIVHEDHGVG 501

Query: 496  LYQGLETLDTGGLVAEYLKLEYAGGDKLYVPVSALHLISRFAVGNDESAPLNRLGNESWS 555
             Y+GL TL+ GG+ AEYL++EYA GD+LYVPV+ LHLI+R++  ++E+APL+ LG E W+
Sbjct: 502  RYRGLVTLEAGGMPAEYLEIEYAKGDRLYVPVAQLHLINRYSGASEETAPLHSLGGEQWT 561

Query: 556  KAKRKAIEKIRDVAAELLDVYARREARPGDPCTLDEAEYAQFAQGFPFEETVDQETAIKA 615
            KAKRKA EK+RDVAAELL++ A+R+AR G    +D A Y  FA  FPFEET DQ  AI+A
Sbjct: 562  KAKRKAAEKVRDVAAELLEIQAKRQARAGLAIDVDRAVYEPFAAAFPFEETPDQHAAIEA 621

Query: 616  VIDDMCQPKAMDRLVCGDVGFGKTEVAMRAAFLAVSSGKQVVVLVPTTLLAQQHFENFKD 675
            VI D+   + MDR+VCGDVGFGKTEVA+RAAF     GKQV VLVPTTLLA+QH+ NF+D
Sbjct: 622  VIRDLASSQPMDRVVCGDVGFGKTEVAVRAAFTTAMGGKQVAVLVPTTLLAEQHYRNFRD 681

Query: 676  RFADWPVRIEVMSRFRTAKEQQAVLSAMGEGKVDIVIGTHKLLNTELNFESLGLLIIDEE 735
            RFADWP+R+EV+SRF+T KE +A L+ + +G +D+++GTH+LL  ++ F+ LG +I+DEE
Sbjct: 682  RFADWPIRVEVLSRFKTKKEIEAELAKVADGTIDVIVGTHRLLQKDVRFKDLGAVIVDEE 741

Query: 736  HRFGVRQKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPPAKRLAVKTFVR 795
             RFGVRQKE +KA+RANV +LTLTATPIPRTLNMAM+G+RDLSIIATPPA RLAV+TFV 
Sbjct: 742  QRFGVRQKEALKALRANVHLLTLTATPIPRTLNMAMAGLRDLSIIATPPAHRLAVQTFVV 801

Query: 796  EYDKATVREAILREILRGGQVYYLHNQVETIEKAAQDIRELLPEARVVTAHGQMRERELE 855
             +D   +REA  RE+ RGGQVY+LHN VE+I +  ++++EL+PEAR+  AHGQM ERELE
Sbjct: 802  PWDDMQLREAFQRELSRGGQVYFLHNDVESIGRMQRELQELVPEARIGVAHGQMPERELE 861

Query: 856  RVMSDFYHQRFNVLVCTTIIETGIDVPSANTILIDRADHFGLAQLHQLRGRVGRSHHQAY 915
            RVM DF+ QR+NVL+ TTIIE+GID+P+ANTI+I+RAD FGLAQLHQLRGRVGRSHH+AY
Sbjct: 862  RVMLDFHKQRYNVLLSTTIIESGIDIPNANTIIINRADRFGLAQLHQLRGRVGRSHHRAY 921

Query: 916  AYLMTPHPKLMTVDARKRLEAIDALEDLGAGFMLATQDLEIRGAGELLGDEQSGHISKIG 975
            AYL+ P  K +T DARKRL+AI A+++LGAGF LAT DLEIRGAGELLG+EQSG ++++G
Sbjct: 922  AYLVVPDRKAITEDARKRLDAIAAMDELGAGFTLATHDLEIRGAGELLGEEQSGQMAEVG 981

Query: 976  FSLYMEMLEGAVKALKQGKEPSLRQMLGAQCEIDLRIPALLPDDYVNDVNMRLSLYKRIA 1035
            FSLY E+LE AV++++QGK P +  +     E++LRIPAL+PDDY+ DV+ RL+LYKRI+
Sbjct: 982  FSLYTELLERAVRSIRQGKLPDVDMVEARGAEVELRIPALIPDDYLPDVHTRLTLYKRIS 1041

Query: 1036 GCDTEKAVDEMKVELIDRFGLLPDATRNLLTMTVQKHRATRLGATKIEMHGRGGSIEFGE 1095
            G      + E++VE+IDRFGLLPD  + +  +   K RAT LG  K+++   GG + F E
Sbjct: 1042 GARDTDELRELQVEMIDRFGLLPDPAKYMFAVAELKLRATELGIRKLDLGETGGRVHFVE 1101

Query: 1096 EHRVDPGFIIGLLSSQPQVYRMDGPNKLRFTMPCETAKERLELLELLLEQLE 1147
            +  VDP  II L+  QP++Y+M+GP+KLR T+    A  R+   + +L  L+
Sbjct: 1102 KPNVDPMAIIRLIQGQPKLYKMEGPDKLRMTLDLPDASSRVLAAKGILTALQ 1153