Pairwise Alignments

Query, 1155 a.a., transcription-repair coupling factor (RefSeq) from Shewanella amazonensis SB2B

Subject, 1160 a.a., transcription-repair coupling factor from Paraburkholderia bryophila 376MFSha3.1

 Score = 1058 bits (2735), Expect = 0.0
 Identities = 569/1102 (51%), Positives = 736/1102 (66%), Gaps = 16/1102 (1%)

Query: 46   IVTSDTPTALVLEAELGYLLKPRGIDICLFPDRETLPYDSFSPHQDLISQRLETLSNLER 105
            +V      A  L  E+G+      +   L PD ETLPYD+FSPHQDL+S+RL TL +L  
Sbjct: 53   VVCESAVDAQRLSQEIGFFAPQARVR--LLPDWETLPYDTFSPHQDLVSERLATLHDLGE 110

Query: 106  GKGRLVIVPLTTLMVRLPPKAFLAANVLILKKGDRYQLQQMRQHLVDTGYHLVEQVYEHG 165
            G+  +++VP TT + R+PP +FLAA      +G+R    +++  L   GY  V QV   G
Sbjct: 111  GRCDILLVPATTALYRMPPASFLAAYTFSFSQGERLDEAKLKAQLTLAGYEHVSQVVRPG 170

Query: 166  EFAIRGSILDIFPSGASEPLRIELFDDEVESIRHFDPETQRSSGEVDSIRMLPAREFPTD 225
            E+ +RGS+LD++P G+  P RI+LFDD+V+SIR FDP+TQRS   V  +R+LP REFP D
Sbjct: 171  EYCVRGSLLDLYPMGSPLPYRIDLFDDQVDSIRAFDPDTQRSLYPVKDVRLLPGREFPFD 230

Query: 226  SQAIEGFRQRYRRTFETVNNAAESVYQLVSRNLMPAGIENYLPLFFDDTATLFDYLPEEL 285
              A   FR R+R TFE   + A S+Y+ +   +  AGIE YLPLFFDDTATLF YLP+  
Sbjct: 231  EAARTAFRSRWRETFEGDPSRA-SIYKDIGNGVPSAGIEYYLPLFFDDTATLFHYLPQGA 289

Query: 286  QIITTGALHQAAEHHLGEIHSRYEDRQVDPLRPLLPPKTLYQTTEELFARFKLYPRIDLS 345
            Q+   G L  A      +   RY     D  RP+L P+ L+ + E+ F   K + R+ L 
Sbjct: 290  QLAFIGDLDAAIRRFGNDTKQRYNFLSHDRDRPILEPQRLFLSDEDFFTLAKPFARLVLP 349

Query: 346  GDEGDKTLEAAPLPDIRANHKLKQPLESLANWAQGG-QRIAFVAESEGRREALLELLGKA 404
             + G     + PLP++  +   + P+ +L  +      R+ F AES GRRE LL+LL   
Sbjct: 350  ANAGGGW--STPLPNLAIDRHAEDPVSALRTYLDTTPNRVLFAAESAGRRETLLQLLADN 407

Query: 405  GLKPKLFGHLDEFLASDSPHGLVVAPLAMGCQLKMGKSQLAVVCETELFGERVSQERRRD 464
             LKP       ++L  D+P  L VAPLA G  + +    +A++ ETEL+G    +  RR 
Sbjct: 408  HLKPASSDSFQDWLTGDAPFSLGVAPLANGFAVPV--DGIAIITETELYGPLARRAGRRR 465

Query: 465  KQRQLSQDVLIKNLAELKVGQPVVHLEHGVGLYQGLETLDTGGLVAEYLKLEYAGGDKLY 524
            +++  + D ++++L+ELKVG PVVH +HG+G Y GL T+D G    E+L LEYAG  KLY
Sbjct: 466  QEQASNVDSMVRDLSELKVGDPVVHSQHGIGRYMGLVTMDLGEGETEFLHLEYAGDSKLY 525

Query: 525  VPVSALHLISRFAVGNDESAPLNRLGNESWSKAKRKAIEKIRDVAAELLDVYARREARPG 584
            VPV+ LH+ISR++  + ESAPL+ LG+  W KAKRKA ++IRD AAELL++YARR AR G
Sbjct: 526  VPVAQLHVISRYSGADPESAPLHSLGSGQWEKAKRKAAQQIRDTAAELLNLYARRAARSG 585

Query: 585  DPCTLDEAEYAQFAQGFPFEETVDQETAIKAVIDDMCQPKAMDRLVCGDVGFGKTEVAMR 644
                L+  +Y +FA+ F FEET DQ  AI AVI DM   K MDRLVCGDVGFGKTEVA+R
Sbjct: 586  HAFALEPKDYVKFAESFGFEETPDQAAAIAAVIGDMTSGKPMDRLVCGDVGFGKTEVALR 645

Query: 645  AAFLAVSSGKQVVVLVPTTLLAQQHFENFKDRFADWPVRIEVMSRFRTAKEQQAVLSAMG 704
            AAF+AV  GKQV +L PTTLLA+QH + F DRF+DWPVRI  +SRF++ KE  A +  + 
Sbjct: 646  AAFIAVMGGKQVALLSPTTLLAEQHTQTFTDRFSDWPVRIAELSRFKSTKEVNAAIQQIN 705

Query: 705  EGKVDIVIGTHKLLNTELNFESLGLLIIDEEHRFGVRQKERIKAMRANVDILTLTATPIP 764
            EG VDIVIGTHKLL++++ F+ LGL+IIDEEHRFGVRQKE +KA+RA VD+LTLTATPIP
Sbjct: 706  EGSVDIVIGTHKLLSSDVQFKRLGLVIIDEEHRFGVRQKEALKALRAEVDVLTLTATPIP 765

Query: 765  RTLNMAMSGMRDLSIIATPPAKRLAVKTFVREYDKATVREAILREILRGGQVYYLHNQVE 824
            RTL MA+ G+RD S+IAT P KRLA+KTFVR  +++ +REA+LRE+ RGGQVY+LHN+VE
Sbjct: 766  RTLGMALEGLRDFSVIATAPQKRLAIKTFVRREEESVIREAMLRELKRGGQVYFLHNEVE 825

Query: 825  TIEKAAQDIRELLPEARVVTAHGQMRERELERVMSDFYHQRFNVLVCTTIIETGIDVPSA 884
            TIE   Q +  L+PEAR+  AHGQM ERELERVM DF  QR NVL+CTTIIETGIDVPSA
Sbjct: 826  TIENRRQMLEALVPEARIAVAHGQMHERELERVMRDFVAQRANVLLCTTIIETGIDVPSA 885

Query: 885  NTILIDRADHFGLAQLHQLRGRVGRSHHQAYAYLMTPHPKLMTVDARKRLEAIDALEDLG 944
            NTILI R+D FGLAQLHQLRGRVGRSHHQAYAYL+   P+ +T  A++RLEAI  +E+LG
Sbjct: 886  NTILIHRSDKFGLAQLHQLRGRVGRSHHQAYAYLLVHDPQGLTKQAQRRLEAIQQMEELG 945

Query: 945  AGFMLATQDLEIRGAGELLGDEQSGHISKIGFSLYMEMLEGAVKALKQGKEPSLRQMLGA 1004
            +GF LA  DLEIRG GE+LGD+QSG I +IGF LY +ML  AVKALK GKEP L   L A
Sbjct: 946  SGFYLAMHDLEIRGTGEVLGDKQSGEIHEIGFQLYTDMLNDAVKALKDGKEPDLTAPLAA 1005

Query: 1005 QCEIDLRIPALLPDDYVNDVNMRLSLYKRIAGCDTEKAVDEMKVELIDRFGLLPDATRNL 1064
              EI+L  PA+LP DY  DV  RLSLYKR+A C+   A+D ++ ELIDRFG LP     L
Sbjct: 1006 TTEINLHAPAILPADYCGDVQERLSLYKRLANCEHSDAIDGIQEELIDRFGKLPPQAHAL 1065

Query: 1065 LTMTVQKHRATRLGATKIEMHGRGGSIEFGEEHRVDPGFIIGLLSSQPQVYRMDGPNKLR 1124
            +     +  A  LG +KI+       ++F     +D   II ++     + ++ G +KLR
Sbjct: 1066 VETHRLRLAAKPLGISKIDAGEAVIGLQFIPNPPIDAMRIIEMVQKHKHI-KLAGQDKLR 1124

Query: 1125 -------FTMPCETAKERLELL 1139
                   F +   T KE L  L
Sbjct: 1125 IETRSPDFAVRVATVKETLRAL 1146