Pairwise Alignments

Query, 872 a.a., DNA topoisomerase I (RefSeq) from Shewanella amazonensis SB2B

Subject, 876 a.a., DNA topoisomerase 1 from Vibrio cholerae E7946 ATCC 55056

 Score = 1220 bits (3156), Expect = 0.0
 Identities = 599/869 (68%), Positives = 702/869 (80%), Gaps = 2/869 (0%)

Query: 1   MGKSLVIVESPAKAKTINKYLGKEFIVKSSVGHIRDLPTSSAAEGKASTKSAAEVRKMNP 60
           MGKSLVIVESPAKAKTINKYLGK+FIVKSSVGH+RDLPT+          +AA  +K + 
Sbjct: 1   MGKSLVIVESPAKAKTINKYLGKDFIVKSSVGHVRDLPTAGQTATPTGKAAAASTKKAST 60

Query: 61  EEKAKYKAQKDKQALVARMGVDPEHGWQANYQVLPGKEKVVKELQSLASSADQIYLATDL 120
            +K + K +K++ AL+ +MGVDP HGWQANYQ+LPGKEKVV ELQ LA  AD +YLATDL
Sbjct: 61  TDKEQQKREKERAALIKKMGVDPYHGWQANYQILPGKEKVVAELQKLAKDADSVYLATDL 120

Query: 121 DREGEAIAWHLQEVIGGDESRYKRVVFNEITKGAIQEAFSRPTDLNTNMVNAQQARRFLD 180
           DREGEAIAWHL+E+IGGDE RYKRVVFNEITK AIQ+AF +P +LN + VNAQQARRF+D
Sbjct: 121 DREGEAIAWHLREIIGGDEKRYKRVVFNEITKNAIQQAFKQPGELNMDGVNAQQARRFMD 180

Query: 181 RVVGFMVSPLLWKKVARGLSAGRVQSVAVRLVVEREAEIKAFVPEEFWDVHATLSTPAAA 240
           RVVGFMVSPLLWKKVARGLSAGRVQSVAV+L+VERE EIKAFVPEEFWD++A   T    
Sbjct: 181 RVVGFMVSPLLWKKVARGLSAGRVQSVAVKLLVEREREIKAFVPEEFWDINADTLTADKQ 240

Query: 241 ELVMEVSRYRNEAFEPVTQSEAMAAVNALEKAAFTVTDREDKATSSKPSAPFITSTLQQA 300
           +  + V++    AF+PV ++EA+AAV AL KA + V  REDK T+SKPSAPFITSTLQQA
Sbjct: 241 DFRLLVAQKDGLAFKPVNETEALAAVAALNKAQYEVCKREDKPTTSKPSAPFITSTLQQA 300

Query: 301 ASTRLGFGVKKTMMLAQRLYEAGHITYMRTDSTNLSQEALENVRAHIEKEFGSKYLPESP 360
           ASTRLG+GVKKTMMLAQRLYEAG+ITYMRTDSTNLS EA+EN+R +I K +G  YLP  P
Sbjct: 301 ASTRLGYGVKKTMMLAQRLYEAGYITYMRTDSTNLSAEAVENLRGYITKHYGEAYLPSQP 360

Query: 361 IRYGSKEGAQEAHEAIRPSNVKVESATLIDMERDAQRLYELIWRQFVACQMTPAVYDATR 420
             YGSK+ AQEAHEAIRPS+V V +  L  ME DA +LY LIW QFVACQMTPA YD+T 
Sbjct: 361 NVYGSKQNAQEAHEAIRPSDVTVTADDLEGMEADAHKLYALIWNQFVACQMTPAQYDSTT 420

Query: 421 ITAKAGDYELKASGRILKFDGWTRVQPALKKKNEEDNTLPDVQVGDMLSLKALDPKQHFT 480
           ++ KA +Y LKA GRILKFDGWTRVQ  L K   ED  LP V+VGD L L +LDPKQHFT
Sbjct: 421 VSVKAAEYTLKAKGRILKFDGWTRVQRPLGK--NEDQILPPVKVGDSLKLVSLDPKQHFT 478

Query: 481 KPPARYSEASLVKELEKRGIGRPSTYAAIISTIQDRGYVKVENRRFYAEKMGEIVTERLV 540
           KPPARY+EA+LVKELEKRGIGRPSTYA+IISTIQDRGYVKV+ RRF+AEKMGEIVT+RL 
Sbjct: 479 KPPARYTEAALVKELEKRGIGRPSTYASIISTIQDRGYVKVDQRRFFAEKMGEIVTDRLD 538

Query: 541 ESFSELMNYDFTAGMEQTLDDVAKGDKDWKGVLDGFYSGFTAKLEKAEAEPDAGGMRPNQ 600
           E+F +LMNYDFTA ME+ LD +A+G+ +W  VLD F++ F+  LE AE +   GGM+PN 
Sbjct: 539 ENFDDLMNYDFTARMEEKLDQIAEGEVNWTAVLDEFFADFSRDLETAEQDESLGGMKPNH 598

Query: 601 MVLTDIPCPTCGRQMGIRTGTTGVFLGCSGYALPPKERCKTTLNLTPGEEAISDSSEDAE 660
           +V+T+I CPTC R MGIRT +TGVFLGCSGY LPPKERCKTT+NL   E  I+   ED E
Sbjct: 599 IVMTNILCPTCSRPMGIRTASTGVFLGCSGYGLPPKERCKTTINLGDEEGVINVLEEDVE 658

Query: 661 TDALRAMHRCGKCGMAMDSYLLDETRKLHVCGNNPECDGYEVEKGAFKLKGYEGPIIECD 720
           T ALRA  RC  C  AMD+YL+D+ RKLHVCGNNP C+G+ VE+G FK+KGYEGP +ECD
Sbjct: 659 TAALRAKKRCPICETAMDAYLIDDKRKLHVCGNNPNCEGFIVEEGEFKVKGYEGPTVECD 718

Query: 721 RCGSDMELKNGRFGKYFGCTNESCKNTRKLLKNGEAAPPKEDPIHLPELKCTKSDAYFVL 780
           +CGSDM LKNGRFGKY GCTN++CKNTRK+LKNGE APPKE+P+H PEL C  SDAYFVL
Sbjct: 719 KCGSDMVLKNGRFGKYMGCTNDACKNTRKILKNGEVAPPKEEPVHFPELPCENSDAYFVL 778

Query: 781 RDGAAGIFLAASTFPRSRETRAPLVEELKKYREALWPKYQYLADAPVEDAEGNKALVKFS 840
           RDGA+G+F AAS FP+SRETRAPLVEELK++ E L  KYQYL  AP  D +G  A+V+FS
Sbjct: 779 RDGASGLFFAASNFPKSRETRAPLVEELKRFAERLPEKYQYLTSAPAHDPDGLPAVVRFS 838

Query: 841 RKTKEQYVATEVNGKATGWSAHFKDGKWV 869
           RK KE YV TE  GK +GW A +++GKW+
Sbjct: 839 RKEKEHYVRTETEGKPSGWMAVYQEGKWL 867