Pairwise Alignments

Query, 381 a.a., exonuclease SbcD, putative (RefSeq) from Shewanella amazonensis SB2B

Subject, 412 a.a., exonuclease SbcCD subunit D C-terminal domain-containing protein from Pseudomonas sp. BP01

 Score =  141 bits (355), Expect = 4e-38
 Identities = 123/373 (32%), Positives = 168/373 (45%), Gaps = 29/373 (7%)

Query: 1   MRFIHTSDWHLGRTLHNQSLLDEQAQMLETLLTLIETHEVDALVIAGDIFDRSVPPAAAV 60
           MR  HTSDWHLG++LH Q    E A  L+ LL  +   + DAL+IAGDIFD   PP  A 
Sbjct: 1   MRLFHTSDWHLGQSLHGQERDFEHACFLDWLLGQLRLRQPDALLIAGDIFDTVNPPVKAQ 60

Query: 61  SLLDDFLDKV-VQQLKVSVIAIGGNHDGQERLAFGARQMAGAGLYIQGPVRASIE----- 114
             L DF+ +   QQ K+ ++ I GNHD   R+   A  M     +  G V    E     
Sbjct: 61  ERLYDFIVQAHEQQPKLDIVMIAGNHDSGSRIELPAALMRRLRTHALGRVHWLDEGQLDA 120

Query: 115 -----PVHIDGKQGAAFFYPIPYAEPALVR-HLLNDEDIHSHQDAMAALLAKVTAHNSDG 168
                P+     + AA+   +P+  PA V    L D+ +         L+A         
Sbjct: 121 ERLLIPLTNGRGKVAAWCLALPFLRPAEVTGPNLGDDYLQGITQVHQQLIAAAQKKRKKD 180

Query: 169 LPKIVISHCFLDGGNES-DSERPLSIGGADKISPALF-APFDYAALGHLHGPQ-YKGAEH 225
              I ISH  + GG+ S DSER L IG A+ +   LF     Y ALGHLH PQ     E 
Sbjct: 181 QALIAISHAHMAGGSVSEDSERSLIIGNAEALPAKLFDKAISYVALGHLHKPQKVNREER 240

Query: 226 VRYSGSPLKYSFSE---QHQNKSV-----TLVNILPGQAP-DIRLLPIKPQRDVRIIEGY 276
           +RYSGSP+  SF+E    HQ   V      LV++ P   P  + L  + P     +++  
Sbjct: 241 IRYSGSPIPLSFAEINYPHQVLEVELDGTDLVSVEPRPVPRAVALQRVGPAPLGELLQQL 300

Query: 277 LDALLTRGASDPGRDDYLMVRLLDTHAILEPMAKLRAIYPNVLHLERTGLMQERALEGPG 336
            D  +     DP R  +L VR++    + EP   LR      L  +   L++  A E  G
Sbjct: 301 ADLPVIDLLEDPNRQPWLEVRVI----LDEPQPDLRQQIETALEGKAVRLIRISA-EYAG 355

Query: 337 RERMQKSELTMFE 349
           R   +  +L   E
Sbjct: 356 RNNAEDDDLAFVE 368