Pairwise Alignments

Query, 381 a.a., exonuclease SbcD, putative (RefSeq) from Shewanella amazonensis SB2B

Subject, 409 a.a., exonuclease SbcCD subunit D from Pseudomonas aeruginosa PA14

 Score =  153 bits (387), Expect = 7e-42
 Identities = 103/278 (37%), Positives = 142/278 (51%), Gaps = 14/278 (5%)

Query: 1   MRFIHTSDWHLGRTLHNQSLLDEQAQMLETLLTLIETHEVDALVIAGDIFDRSVPPAAAV 60
           MR IHTSDWHLG+TLH Q    E A+ L+ LL  +E    D L+IAGDIFD   PP  A 
Sbjct: 1   MRLIHTSDWHLGQTLHGQDRDHEHARFLDWLLRQLEEQRADVLLIAGDIFDTINPPLKAQ 60

Query: 61  SLLDDFLDKVVQQL-KVSVIAIGGNHDGQERLAFGARQMAGAGLYIQGPVRASIE----- 114
             L DF+    ++L ++ ++ I GNHD   R+   A  M     +  G +    E     
Sbjct: 61  ERLYDFIVSAHRRLPRLEIVMIAGNHDSGARIELPAPLMKRLNAHAIGRIGWIDESLDSD 120

Query: 115 ----PVHIDGKQGAAFFYPIPYAEPALVR-HLLNDEDIHSHQDAMAALLAKVTAHNSDGL 169
               P+H    Q AA+   +P+  PA V    L D+ +   +     L+A   A  + G 
Sbjct: 121 RLLLPLHDADGQVAAWCLALPFLRPAEVTGGGLGDDYLAGIRQVHERLVAAAQARRTPGQ 180

Query: 170 PKIVISHCFLDGGNES-DSERPLSIGGADKISPALF-APFDYAALGHLHGPQ-YKGAEHV 226
             + +SH  + GG+ S DSER L IG  + +  +LF     Y ALGHLH PQ   G E +
Sbjct: 181 ALVAVSHAHMAGGSVSEDSERNLIIGNVEALPASLFPEQIAYVALGHLHKPQKVAGQERI 240

Query: 227 RYSGSPLKYSFSEQHQNKSVTLVNILPGQAPDIRLLPI 264
           RYSGSPL  SF+E +    V LV +   +  D++ LP+
Sbjct: 241 RYSGSPLPLSFAEVNYRHQVLLVTLEGERLKDVQSLPV 278