Pairwise Alignments

Query, 260 a.a., hypothetical protein (RefSeq) from Shewanella amazonensis SB2B

Subject, 259 a.a., Membrane protein, putative from Pseudomonas fluorescens FW300-N1B4

 Score =  155 bits (393), Expect = 6e-43
 Identities = 92/250 (36%), Positives = 134/250 (53%), Gaps = 2/250 (0%)

Query: 5   MDFAFSIELA--ALLFFVAMLAGFIDAIAGGGGLLTIPALMWAGLSPAAALATNKLQACG 62
           M F  S++L   A+L  VA +AGFIDAIAGGGGLLT PAL+ AGL P   L TNKL +  
Sbjct: 1   MPFELSVDLTTLAVLALVAFIAGFIDAIAGGGGLLTTPALLTAGLPPHLVLGTNKLSSTF 60

Query: 63  GSFFASLYFVRKKMVDLASIKLDIFCAFVGAAIGTIAVQLIDASMLKTLLPFLMLAIGGY 122
           GS  AS  F R+K+         I    VGA  G +    + A  L  +LP ++ A G Y
Sbjct: 61  GSATASFTFYRRKLFHPRQWMHAIVGTLVGALTGAVVAHYLPAEWLNKMLPVIVFACGLY 120

Query: 123 FLFSKKVSEDDRHRVLTPTLFAFSAALGIGFYDGFFGPGTGSFFALAFVSLAGFGLAKAT 182
            LF                 +  +    +GFYDG  GPGTG+F+ ++ + L    L KA+
Sbjct: 121 LLFGGTPKAPLDSDAPIKKKWQSTQGFSLGFYDGVAGPGTGAFWTVSSLLLYPIDLVKAS 180

Query: 183 AHAKVLNFATNISSLIFFALGGKVVWMLGGLMLLGQAMGATLGSRLVVNKGTAIIKPLVV 242
             A+ +NF +NI++L  F   G+V W++G  M L   +GA  G+R  ++ G   I+P+ +
Sbjct: 181 GVARSMNFVSNIAALSVFIFSGQVDWIIGLSMGLSVMVGAFFGARTAISGGAKFIRPVFI 240

Query: 243 LMSVVMSTKL 252
            + + ++ +L
Sbjct: 241 TVVLGLTVRL 250