Pairwise Alignments

Query, 907 a.a., TonB-dependent receptor (RefSeq) from Shewanella amazonensis SB2B

Subject, 884 a.a., TonB-dependent receptor domain protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  322 bits (825), Expect = 6e-92
 Identities = 272/919 (29%), Positives = 416/919 (45%), Gaps = 115/919 (12%)

Query: 1   MLKNSMLAKSVRFALVAGATTAAFTAPTVYAA-DEGEKVERIEVTGSRIKRTDLETASPI 59
           M  NS L K+VRFAL+ GATTAA +  +V+AA D+  KVERIEVTGSRI+RTD+E+A P+
Sbjct: 1   MRANSTLTKAVRFALIGGATTAALSTMSVFAAEDDNAKVERIEVTGSRIQRTDMESALPV 60

Query: 60  TMFSAEDIANSGVATLEDFVQNIPAINGGAEGSSVNNGSRGFATASLRGLGSGRTLVLIN 119
           T+ SAEDIA +G++ +   +  +P    G+  S   + +   A++ +RGLGS RTL LIN
Sbjct: 61  TVLSAEDIAKTGLSDVSAVLAQMPFNTAGSFISDAGSSASNHASSGMRGLGSNRTLTLIN 120

Query: 120 GRRFA-----SGD---LNSIPTAYVERIEVLRDGASTVYGSDAIAGVINFITKKDFEGIE 171
           GRR A      GD   LN IP   +ERIE+LRDGAS +YGSDAI GVIN I KK F+G+ 
Sbjct: 121 GRRIAPSATFGGDATNLNLIPMDAIERIEILRDGASAIYGSDAIGGVINIILKKTFDGLA 180

Query: 172 FGAQYDIASEGDGEKTLLSVTTGTSSDRGNVVMSLQYTKREAIWQGDRDFSACPIFERGG 231
           F A++   ++G  ++   SVT G +SD+ + ++ +++ + + +  G R        E+ G
Sbjct: 181 FDAKFGNPTQGGRDEKSASVTFGNTSDKSSSLVIIEHKQFDPLEGGQRPHLTANWDEKYG 240

Query: 232 EK----------------VCGGSGTIPYGQFFYTGANSPAGGHVIDPSTGAIRKFDQAVD 275
                             + G  GT  +    YTG   P       P+   +     +  
Sbjct: 241 RSALYAPEGTYRPVASRPIKGADGT--FSDPVYTGLQVPGKD---CPADRIVTSKAGSAC 295

Query: 276 GYNYAVASYMVTPQEVFSINGAGRYEISDTLTGFMEGGFTNRQSDQLMAPEGTFWGPTM- 334
           G+N+   +  +  Q   S+     Y I+D L  F   G      D+ +      W P + 
Sbjct: 296 GFNHFDGTDYLPDQTKDSVFSNMTYRITDELEWF---GQAIVMRDKSITSSTALWTPNLY 352

Query: 335 -PASNPYNPT-----GEDLIVVRRLAETGGRGFTQDFSDYRMVFG--LEGSLGDYYWDLS 386
             A NP NPT       ++    RL     R    D +   +V G  LE   G   W   
Sbjct: 353 IAADNPLNPTFGTANASEVQAYHRLKGVADRTTEFDSNVVDVVTGLNLELDAGSLSW--- 409

Query: 387 YNFARYVDSRLDLGRVNPTRAETLLDPDLCAKDSDCPGIWNPLAEGTLTPEMLAYAFVPN 446
             + +Y D  +++        ++ +  D   +  D  G++NP  EG    +     F+  
Sbjct: 410 --YVQYSDQIVNI------ETDSYVFEDKLQEAVD-KGLYNPFVEGGNATQATLDTFLHT 460

Query: 447 SPVVRGETRQLQGNISG------SLFGLELPGGEVMFAAGFEKRWDEYQSVPDGAASIGQ 500
           +      TR+   N +G      +L  + LPGG++ +A G E +  EY+   D   + G 
Sbjct: 461 A------TRKATSNTTGTGLSWAALAPISLPGGDLGYAVGMEYQKIEYKDTRDAQQAAGN 514

Query: 501 IYSVAGEPTSGDYSVNEAYAEFDMPVLEGLPFAESVRVTAAVRYSDFDFLDDGSTNTKFG 560
           +    G  ++GD S   A+ E ++PVL+ L       V  A RY  +   D G  +    
Sbjct: 515 VLGTYGGDSAGDRSYKAAFVELELPVLDHL------NVKLASRYDQYSLPDVGQLSNSVN 568

Query: 561 LEWVPFDGLMLRSTLADGFRAPSVSELYAPQSETNLAYAEPCKNYATGTQNATVKANCAA 620
           + +   D L+LR++   GFRAPS+ +L            EP  +Y   T + T+  +  A
Sbjct: 569 VRYEALDNLVLRASYGQGFRAPSLDDL----------LGEPATSYDYVT-DTTLCQSLPA 617

Query: 621 EGLPGNFELSSNQSSTVVGGNPDLQPEESESFTAGFVYSHDIGFSASVDYFNIEITNGIG 680
           +   GN      Q      GN +L+PE+S  ++ G V++        VDY+NIEIT+ + 
Sbjct: 618 DQQKGNPACEDTQYLRKSSGNKELEPEKSAQYSFGAVWNITENIDFVVDYYNIEITDQVS 677

Query: 681 TAGTDNVVSACWNSANFSSPLCDLIKGPSLTGDAPHPTSPYRTALGPVAGILLTNANLST 740
                 +V              DL     L    P+     R A G +  I   N N+  
Sbjct: 678 YIDAQTIV--------------DLEAIGGLGAYDPNYIYVKRKADGTIDEIGAGNINMDG 723

Query: 741 FETSGYDFDLSYKTDIGE-GQFSALLNGTYLEQYDYLPYEGADIVSAAGKVAADQWETTL 799
            +TSG D   +   D+ + G F   + GTY  +Y             A  +A        
Sbjct: 724 VQTSGLDVSFTSNFDLADLGTFKFAVEGTYALEY----------TEQASPIAKRYDVLGT 773

Query: 800 AVFPRLRANLSLNYTMDNWSVSWQTRY--QSEGEDYFASE---DNLDNIADSIWYHDVQG 854
             +P LR N + +Y +D++S S   +Y    +GE     E   +  D  + + W  D+  
Sbjct: 774 KGYPPLRFNTTFSYAIDDFSTSLIAKYIDSYDGETPQQQEVGTNKQDFSSFTTW--DLTF 831

Query: 855 TYFAMDNLSLTVGVRNLFD 873
            Y      ++TVG RNLFD
Sbjct: 832 NYDFNSYGNVTVGARNLFD 850