Pairwise Alignments

Query, 907 a.a., TonB-dependent receptor (RefSeq) from Shewanella amazonensis SB2B

Subject, 891 a.a., hypothetical TonB-dependent receptor (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  343 bits (879), Expect = 4e-98
 Identities = 308/971 (31%), Positives = 424/971 (43%), Gaps = 144/971 (14%)

Query: 1   MLKNSMLAKSVRFALVAGATTAAFTAPTVYAADEG----EKVERIEVTGSRIKRTDLETA 56
           M   + +A++VRF+L+A  +T+   AP   AA++G     KVERI VTGSRI+RTD+ET+
Sbjct: 1   MTTQTTVARAVRFSLLALVSTSI--APIAMAAEQGAVDANKVERIAVTGSRIQRTDMETS 58

Query: 57  SPITMFSAEDIANSGVATLEDFVQNIPAINGGA--EGSSVNNGSRGFATASLRGLGSGRT 114
           SP+T+ S  +I  SG AT+ DFV+N+   + G+  E S   +G    +T S+RGLGS RT
Sbjct: 59  SPVTVISRAEIDASGTATVSDFVRNLSQNSFGSFREASGFGSGQSSQSTVSMRGLGSQRT 118

Query: 115 LVLINGRRFASG--------DLNSIPTAYVERIEVLRDGASTVYGSDAIAGVINFITKKD 166
           LVLI+GRR  S         +LN +P A +ERIEVLRDGAS VYGSDA+AGVIN ITKK+
Sbjct: 119 LVLIDGRRMGSSVAFGGGTQNLNVVPMAAIERIEVLRDGASAVYGSDAVAGVINIITKKE 178

Query: 167 FEGIEFGAQYDIASEGDGEKTLLSVTTGTSSDRGNVVMSLQYTKREAIWQGDRDFSACPI 226
           FEG+EF A       G  EK+    T G +S++ N+V S++Y  R A++  DRD+S    
Sbjct: 179 FEGVEFDADLGATQHGGAEKSNARFTFGVNSEKTNMVASVEYYNRAALYDADRDYSDTLY 238

Query: 227 FERGGEKVCGGSGTIPYGQFFYTGANSPAGGH----VIDPSTGAIRKFDQAVDG-----Y 277
              G     G    +   +        P G +      D   G         DG     Y
Sbjct: 239 SAHGWP---GTGSYVDKTKPILDADGKPTGKYQTVSFADKRCGEGNSLVTGPDGNQTCSY 295

Query: 278 NYAVASYMVTPQEVFS------------INGAGRYEISDTLTGFMEGGF----------- 314
           N A  S  +  QE FS            IN   R  +S   T   EG +           
Sbjct: 296 NAAAESATMAAQERFSTFVKVDHELTEDINWTNRLMMSRVWT---EGQYAAAPNSYSPKL 352

Query: 315 --TNRQSDQLMAPEGTFWGPTMPASNPY----NPTGEDLIVVR-RLAETGGRGFTQDFSD 367
             T   SD  +A    +    +     Y    N  G D I ++ R    G R    + +D
Sbjct: 353 RWTKENSDIYLATVNKYGNDYLKNQLKYDAKGNLIGGDTINLKMRTTPLGPRVTNVEDTD 412

Query: 368 YRMVFGLEGS---LGDYYWDLSYNFARYVDSRLDLGRVNPTRAETLLDPDLCAKDSDCPG 424
              +  LEG    LG   W+L   + R   + +  G  N    +  LD      D    G
Sbjct: 413 INFLTALEGHSDILGGTAWNLGAQWIRSDVTTIQTGLANANMIQEFLDNG--KLDYFAAG 470

Query: 425 IWNPLAEGTLTPEMLAYAFVPNSPVVRGETRQLQGNISGSLFGLELPGGEVMFAAGFEKR 484
                    L  +  A+  +      R +T  + G  S  LF  ELP G V  A GFE  
Sbjct: 471 TGYVEGSNELQLQEAAHTGIFTG---RVQTYGIDGGASFDLF--ELPAGTVPLAIGFEFM 525

Query: 485 WDEYQSVPDGAASIGQIYSVAGEPTSGDYS--VNEAYAEFDMPVLEGLPFAESVRVTAAV 542
             EY    D  +++G I   +G       S  V    AE   P+++GL    S R     
Sbjct: 526 RTEYDKTNDAGSNLGNIIGTSGGDNIQGKSREVLSFSAETMFPIIDGLDLELSARFD--- 582

Query: 543 RYSDFDFLDDGST-NTKFGLEWVPFDGLMLRSTLADGFRAPSVSELYAPQSETNLAYAEP 601
                D+ D GST N K GL + P D L++R++   GFRAP+  +LYA  SET L   + 
Sbjct: 583 -----DYSDFGSTFNPKVGLSYRPVDSLLVRASYGTGFRAPTFDDLYATASETYLWARD- 636

Query: 602 CKNYATGTQNATVKANCAAEGLPGNFELSSNQSSTVVGGNPDLQPEESESFTAGFVYSHD 661
                  TQ       C  E     ++           GN DL+PEES S + G V++  
Sbjct: 637 ------WTQCPGNPNGCVQEQFKAQYQ-----------GNDDLEPEESTSLSLGLVWNVT 679

Query: 662 IGFSASVDYFNIEITNGIGTAGTDNVVSACWNSANFSSPLCDLIKGPSLTGDAPHPTSPY 721
                 + Y++I+I N I T  T +V++   +  + S+    L + P             
Sbjct: 680 DALDFELSYYDIQIDNVISTMSTQDVLNQERDGFDMSNV---LFRDP------------- 723

Query: 722 RTALGPVAGILLTNANLSTFETSGYDFDLSY--KTDIGEGQFSALLNGTYLEQYDYLPY- 778
               G +  ++L   NL   +TSG DF++ Y  +T +GE +F A  N     +    PY 
Sbjct: 724 --VTGKIDYVVLQKMNLGELKTSGIDFNIRYLLETSVGEFRFGAETNYVLSWESKDGPYS 781

Query: 779 EGADIVSAAGKVAADQWETTLAVFPRLRANLSLNYTMDNWSVSWQTRY--QSEGEDYFAS 836
           E  DI+   G+             P+ RANLS  +T   W  S   RY    E EDY   
Sbjct: 782 ELEDIIGDVGQ-------------PQFRANLSTTWTQGEWEASLFARYTDSQEDEDY--- 825

Query: 837 EDNLDNIADSIWYHDVQGTYFAMDNLSLTVGVRNLFDEEAPYISNNQDMNTIPVSYDTAG 896
                    S W  D Q  Y    N  + VG+RNL DEE     N          YD  G
Sbjct: 826 -----GKTPSQWLLDAQAGYNLPWNAKVNVGIRNLLDEEPAMNENLGFPGYDTYLYDPIG 880

Query: 897 QYWYARVNVKF 907
           + +Y R N KF
Sbjct: 881 REYYVRYNQKF 891