Pairwise Alignments

Query, 854 a.a., DNA mismatch repair protein MutS (RefSeq) from Shewanella amazonensis SB2B

Subject, 910 a.a., DNA mismatch repair protein MutS (RefSeq) from Desulfovibrio vulgaris Miyazaki F

 Score =  584 bits (1505), Expect = e-171
 Identities = 362/889 (40%), Positives = 511/889 (57%), Gaps = 53/889 (5%)

Query: 15  MMRQYLTMKAAHPDMLLFYRMGDFYELFYDDAKRASEMLSISLTARGKSGGDPIPMAGIP 74
           M  QYL +K  +PD LL YRMGDFYE+F+DDA+ A+  L I+LT R  +    +PM G+P
Sbjct: 1   MFEQYLRIKDDYPDALLLYRMGDFYEMFFDDAETAARELQIALTCRNPNADLRVPMCGVP 60

Query: 75  YHAVEGYLAKLVQLGQSVAICEQIGDPATAKGPVERKVVRVVTPGTLTDEALLQERQDNL 134
           +H+VEGY+ +L++ G  VA+C+QI DP  AKG V+R V RV+TPGT+ ++A L  +  N 
Sbjct: 61  HHSVEGYITQLLEKGFKVALCDQIEDPREAKGLVKRAVTRVLTPGTVVEDANLDAKGHNY 120

Query: 135 LAAVY--QGKVGYGFATLDVASGRFVIAELPSREALEAELQRTSPAELLYSEDF---GDM 189
           L A++  + K   GFA LD ++G +          L   +++  P ELL +E       M
Sbjct: 121 LGALFWDEEKEAGGFAWLDFSTGEWSGLHAKKAADLWQWVRKMQPRELLVTESAQVPSSM 180

Query: 190 GLINH--IRGKRRRPEWEFDYDTCIKMLLEQFGTRDLRGFGIADARLSLQAAGCLMQYVK 247
            L +   +R   R P   FD     + LL   G RD    G+      +++ G L+ YV 
Sbjct: 181 SLTSTQVVRVPGRAP---FDLKAATERLLHAQGVRDTGALGLEGKDELVRSCGALLAYVV 237

Query: 248 DTQRTALPHINSIVRFNQGDSIILDAATRRNLELTVSLSGSR-ENTLASVLDNTVTAMGS 306
            TQ+  + H+      N G  +I+D  T RNLE+   L G +   TL  VLD+T T MG 
Sbjct: 238 QTQKQDIIHLAPFRPLNLGRHLIVDEVTERNLEIFRRLDGRKGPGTLWHVLDHTQTPMGG 297

Query: 307 RMLQRWIHQPLRCHDTIRGRQQAVQELLETG-LYEDLRAELKALGDIERILARLALRSAR 365
           R+L+  +  P R    I   Q AV  L E      DLRA L  + D+ER+  R+ L  A 
Sbjct: 298 RLLEERLRHPWREMGPIEETQAAVSWLFERDDTRRDLRAGLDEVYDLERLTTRIFLNRAA 357

Query: 366 PRDFARLRDALGILPLIRERLQRCDARH-----------------LKSLNILLGDFPEEY 408
           P+D+  LR +L  LP +R  L+R +  H                 L++      D  + +
Sbjct: 358 PKDYVALRQSLAALPKVRGVLERTETPHGGYPTDGEARGDGRPPFLRAALKGWDDLSDYF 417

Query: 409 ELLCRAIVDNPPVLIRDGGVIREGYDSELDEWRKLSDGGIDYLEQMELREKERTGIATLK 468
           +LL RA+VD+PP L+ +GG+ R G+ +ELDE   L++ G + L+Q+   E+  +G+  LK
Sbjct: 418 DLLERALVDSPPHLVTEGGLFRPGFHAELDELLDLTEHGENMLQQLLAEEQAASGLPRLK 477

Query: 469 VGFNRVHGYYIEVSRAQSALVPIAYQRRQTLKNTERYITPELKEYEEKVLSSQGKALALE 528
           +GFNRV GYY E+SR  S  VP  + RRQTL N ER+ TP LKE EEK++S+  +  +LE
Sbjct: 478 LGFNRVFGYYFELSRTASDAVPEHFVRRQTLANAERFTTPRLKELEEKLVSASDRRKSLE 537

Query: 529 KQLWEELFDLILPKLQELQDFALAASELDVLANFADRADLFNYHCPELSDTTGILIEAGR 588
            +L+++L + +      +   A   +  D   + A+ A  +N+  P L+    ILI  GR
Sbjct: 538 YKLFQKLRETVSEARPRVLFMADLLAGFDYWQSLAETARRWNWTRPVLAQDADILIREGR 597

Query: 589 HPVVERVSQSP-FIPNPVELSNHRRMLIVTGPNMGGKSTYMRQVALITLMAHIGSFVPAE 647
           HPVVE +  S  FIPN + +   RR+L++TGPNM GKST +RQ A+I L+A +GSFVPA 
Sbjct: 598 HPVVEAMQGSANFIPNDLRMDEARRLLLITGPNMAGKSTVLRQTAIICLLAQMGSFVPAR 657

Query: 648 RALIGPVDRIFTRIGASDDLASGRSTFMVEMTETANILHNATANSLVLMDEIGRGTSTYD 707
            A +G  DR+F+R+GASD+LA G+STFMVEM ETA IL  A   SLV++DEIGRGTST+D
Sbjct: 658 EARLGIADRVFSRVGASDNLAQGQSTFMVEMMETARILRQAGKRSLVILDEIGRGTSTFD 717

Query: 708 GMSLAWSAAEYLAQKLGA--MTLFATHYFELTQLPEMLPGVHNVHLDAIEHDDTIAFMHA 765
           G++LAW+  E LA++ G    TLFATHY ELT L   +PGVHN+++   E    I F+  
Sbjct: 718 GLALAWAVVEELARRAGGTIRTLFATHYHELTALEGRIPGVHNMNIAIREWGGEIVFLRR 777

Query: 766 VQEGAASKSYGLQVAALAGVPANVIKAAKHKLLQLE-SRD-------------HGVDM-- 809
           +  G + +SYG++VA LAGVP  V++ A+  L +LE +RD              G+DM  
Sbjct: 778 LVPGPSDRSYGIEVARLAGVPQPVVQRARELLHELEKARDGRGEAPRTARAVLPGLDMPE 837

Query: 810 SKQQALP---LTMTPEPSAAEL--RLEAIDPNDLSPRQALELLFELKRL 853
            KQ A P   L    EP A  L   L  +D + L+P  AL+LL E K L
Sbjct: 838 PKQAAKPRALLAARAEPVAHPLLTTLRDLDTDHLTPMGALQLLNEWKLL 886