Pairwise Alignments

Query, 854 a.a., DNA mismatch repair protein MutS (RefSeq) from Shewanella amazonensis SB2B

Subject, 877 a.a., DNA mismatch repair protein MutS (RefSeq) from Dinoroseobacter shibae DFL-12

 Score =  609 bits (1571), Expect = e-178
 Identities = 378/870 (43%), Positives = 514/870 (59%), Gaps = 32/870 (3%)

Query: 13  TPMMRQYLTMKAAHPDMLLFYRMGDFYELFYDDAKRASEMLSISLTARGKSGGDPIPMAG 72
           TPMM QYL +K  H D LLFYRMGDFYE+F+DDA  A+  L I+LT RGK     IPM G
Sbjct: 7   TPMMAQYLEIKQDHADALLFYRMGDFYEMFFDDAVEAAAALDIALTKRGKHDDADIPMCG 66

Query: 73  IPYHAVEGYLAKLVQLGQSVAICEQIGDPATAK-----GPVERKVVRVVTPGTLTDEALL 127
           +P HA EGYL  L++ G  VA+CEQ+ DPA AK       V R+VVR+VTPGTLT+ +LL
Sbjct: 67  VPVHAAEGYLLTLIRKGFRVAVCEQMEDPAEAKKRGSKSVVRREVVRLVTPGTLTEASLL 126

Query: 128 QERQDNLLAAVYQGKVGYGFATLDVASGRFVIAELPSREALEAELQRTSPAELLYSEDFG 187
           + R+ N LAA  + +     A +D+++G F +   P+   L  +L R +P E+L +E   
Sbjct: 127 EARRHNYLAAFAKVRDDSALAWVDISTGEFRVMACPAAR-LSVDLARLAPREVLLAEGND 185

Query: 188 DMGLIN-HIRGKRRRPEWEFDYDTCIKMLLEQFGTRDLRGFGIADARLSLQAAGCLMQYV 246
              L+  H           FD    +  L   +G  DL  FG  + R  L A G ++ Y+
Sbjct: 186 LRSLVEEHEAAATELGRASFDSTAAVDRLCRLYGVADLEAFGSFE-RADLSAMGAIVGYL 244

Query: 247 KDTQRTALPHINSIVRFNQGDSIILDAATRRNLELTVSLSGSRENTLASVLDNTVTAMGS 306
           + TQ+  LP +   V+      + +DAATRRNLELT SLSG RE  L +V+D TVTA G+
Sbjct: 245 ELTQKGKLPLLRKPVKERAQHGLQIDAATRRNLELTQSLSGGREGALLTVIDRTVTAQGA 304

Query: 307 RMLQRWIHQPLRCHDTIRGRQQAVQELLETG-LYEDLRAELKALGDIERILARLALRSAR 365
           R+L R +  P      IR R + V+  LE   + + +R  L+ + D++R L+RLAL    
Sbjct: 305 RLLARRLASPSADLSIIRTRHEGVRYALEAPEILDTVRTALRQVPDMDRALSRLALDRGG 364

Query: 366 PRDFARLRDALGILPLIRERLQRCDARHL--KSLNILLGDFPEEYELLCRAIVDNPPVLI 423
           PRD A +R+ L     + E L       L  +S +   G      +LL +A++  PP+L 
Sbjct: 365 PRDLAAIRNGLAQAATLAEALPDDALPPLWAQSKSRFFGHDALR-DLLEKALIAEPPLLT 423

Query: 424 RDGGVIREGYDSELDEWRKLSDGGIDYLEQMELREKERTGIATLKVGFNRVHGYYIEVS- 482
           RDGG +  GY+ +LDE R+L D G   +  M+    E TGIA+LKV  N V GY+IE + 
Sbjct: 424 RDGGFVASGYNVDLDEARQLRDEGRGVIAGMQAEYAEATGIASLKVKHNNVLGYFIETTA 483

Query: 483 -RAQSALVPIAYQR---RQTLKNTERYITPELKEYEEKVLSSQGKALALEKQLWEELFDL 538
             A   L P    R   RQT  N  R+ T EL E E ++L++ G+ALALEK ++EEL   
Sbjct: 484 THADKMLSPPLSDRFIHRQTTANAVRFTTVELSEMETRILNAGGRALALEKSIFEELRQA 543

Query: 539 ILPKLQELQDFALAASELDVLANFADRADLFNYHCPELSDTTGILIEAGRHPVVE---RV 595
           ++    EL D A A +ELDV+   A  A   ++  P++ D+    I  GRHPVVE   R 
Sbjct: 544 VIVAAAELSDCARALAELDVVTALAVLARDEDWCAPKVDDSRAFEISGGRHPVVEAALRA 603

Query: 596 SQSPFIPNPVELSNHRRML-IVTGPNMGGKSTYMRQVALITLMAHIGSFVPAERALIGPV 654
           S +PFI N  +LS     + ++TGPNM GKST++RQ ALI ++A +GS+VPA  A IG V
Sbjct: 604 SGTPFIRNDCDLSEGAAPIWLLTGPNMAGKSTFLRQNALIAILAQMGSYVPATAARIGLV 663

Query: 655 DRIFTRIGASDDLASGRSTFMVEMTETANILHNATANSLVLMDEIGRGTSTYDGMSLAWS 714
            ++F+R+GASDDLA GRSTFMVEM ETA IL+ A   +LV++DEIGRGT+TYDG+S+AW+
Sbjct: 664 AQVFSRVGASDDLARGRSTFMVEMVETAAILNQAGDRALVILDEIGRGTATYDGLSIAWA 723

Query: 715 AAEYLAQKLGAMTLFATHYFELTQLPEMLPGVHNVHLDAIEHDDTIAFMHAVQEGAASKS 774
             E+L        LFATHY E+T L   L GV N  +   EHD  + F+H V+ GAA +S
Sbjct: 724 TLEHLHGVNRCRALFATHYHEMTGLAAQLSGVENATVAVKEHDGDVIFLHEVRRGAADRS 783

Query: 775 YGLQVAALAGVPANVIKAAKHKLLQLESRDH-GVDMSKQ--QALPLTMTPEP-------- 823
           YG+QVA LAG+P +V+  A+  L  LES +  G + +K   + LPL     P        
Sbjct: 784 YGVQVAKLAGLPPSVVARAREVLKTLESGERSGGNPAKALLEDLPLFANAAPPPPPAAPT 843

Query: 824 SAAELRLEAIDPNDLSPRQALELLFELKRL 853
           SA E RL  I P+ LSPR+AL+L++ELK L
Sbjct: 844 SALEARLADISPDALSPREALDLVYELKSL 873