Pairwise Alignments

Query, 327 a.a., RNA polymerase sigma-38 factor (RefSeq) from Shewanella amazonensis SB2B

Subject, 590 a.a., RNA polymerase sigma-70 factor (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

 Score =  218 bits (555), Expect = 3e-61
 Identities = 105/249 (42%), Positives = 171/249 (68%)

Query: 71  EEEVYYSRKALRGCEKSRNRMIESNLRLVVKIARRYNNRGLALLDLIEEGNLGLIRAVEK 130
           EE ++  ++      +++  +I SNLRLVV IA++Y NRGL  LDLI+EGN+GL++AV+K
Sbjct: 336 EEVLWRIKRGNSIAMRAKQELIRSNLRLVVSIAKKYTNRGLQFLDLIQEGNIGLMKAVDK 395

Query: 131 FDPERGFRFSTYATWWIRQTIERAIMNQTRTIRLPIHVVKELNVYLRTARELAHKLDHEP 190
           F+ +RG++FSTYATWWIRQ I RAI +Q RTIR+P+H+++ +N  +RT+R L  +L  +P
Sbjct: 396 FEYQRGYKFSTYATWWIRQAITRAIADQARTIRIPVHMIETINKLIRTSRYLVQELGRDP 455

Query: 191 TAEEIAAKLNLPSVEVSRMLKLNEKITSVDVPLGGDNDKALLDVLPDDDSVGPDYKVQDE 250
           T EEIA +++ P  +V ++LK+ ++  S++ P+G + D +L D + D  +V P  +V + 
Sbjct: 456 TPEEIAERMDYPIDKVKKVLKIAKEPISLETPIGDEEDSSLGDFIEDKKAVAPAEEVVNT 515

Query: 251 DISNSVVNWLNELNTKQREVLARRFGLLGYEPSTLEDVGAEIGLTRERVRQIQVEALKRL 310
            +   + + L +L  ++ +VL +RFG+      TLE+VG    +TRER+RQI+ +AL++L
Sbjct: 516 KLGEQIASVLADLTPREEQVLRKRFGIGEKSDHTLEEVGKLFNVTRERIRQIEAKALRKL 575

Query: 311 RDILSAQGL 319
           R  + +Q L
Sbjct: 576 RHPVRSQTL 584



 Score = 38.9 bits (89), Expect = 3e-07
 Identities = 66/315 (20%), Positives = 123/315 (39%), Gaps = 66/315 (20%)

Query: 21  ADTDTNMDGEEVSLVQ-------------DLELEQQVQDDLQRNLDATQLYLSEIGFSPL 67
           A  D+  DG+++S+               DL  +++  D   R+ D  ++YL E+G  PL
Sbjct: 55  AIVDSEKDGKKISMSPGESEEEAPSEGGLDLSDDEETVDYSSRSTDPVRMYLREMGSVPL 114

Query: 68  LTAEEEVYYSRKALRGCEKSRNRMIESNLRL--VVKIARRYNNRGLALLDLIEEGNLGLI 125
           L  + EV  ++K   G +     ++E  + +  +V +        + L D        ++
Sbjct: 115 LDRDGEVVIAKKIEMGEQDVLYALVEVPVAVEELVNVGEDLKQNRIKLKD--------VV 166

Query: 126 RAVEKFDPERGFRFSTYATWWIRQTIERAIMNQTRTIRLPIHVVKELNVYLRTARELAHK 185
           + +E+ DP                      MNQ + +   I +++E+    +  R++  K
Sbjct: 167 KTIEEDDPSED------------------EMNQRQRV---ILLLEEIRTTFKKKRKVYSK 205

Query: 186 LDHEPTAEEIAAKLNLPSVEVSRMLKLNEKITS--VDVPLGGDNDKALLDVLPDDDSVGP 243
           LD   T E   A +         ++   E I S   D+ L    +K L+D + +      
Sbjct: 206 LDECCTLERRVASVQ------REIMNYKEDIVSRLRDIKL----EKTLIDRIIE---TVE 252

Query: 244 DYKVQDEDISNSVVNWLNELNTKQREVLARRFGLLGYEPSTLEDVGAEIGLTRERVRQI- 302
           DY  Q  +    +  ++      Q E+ A   GL   E S +    A + +T E +    
Sbjct: 253 DYVRQMHNCQRDLSAYILSTGKTQAEIQALFSGLEAREVSPVA-ASAALNMTVEELFSFK 311

Query: 303 -----QVEALKRLRD 312
                ++E L RL+D
Sbjct: 312 EMILGKIEILSRLQD 326