Pairwise Alignments

Query, 499 a.a., transcription elongation factor NusA (RefSeq) from Shewanella amazonensis SB2B

Subject, 495 a.a., transcription termination/antitermination protein NusA from Vibrio cholerae E7946 ATCC 55056

 Score =  726 bits (1874), Expect = 0.0
 Identities = 361/499 (72%), Positives = 437/499 (87%), Gaps = 4/499 (0%)

Query: 1   MNKEILLVAEAVSNEKAVPREKIFEALETALATATKKKYEGDIDVRVAIDRKTGDYETFR 60
           M+KEIL V EAVSNEKAVPRE+IFEALETALAT+TKKKYE +IDVRVAIDRKTG +ETFR
Sbjct: 1   MSKEILAVVEAVSNEKAVPRERIFEALETALATSTKKKYEIEIDVRVAIDRKTGAFETFR 60

Query: 61  RWMVVEDNGEALENPYREITLEAAQYENPEIQVGEFIEDEIESVVFDRITTQTAKQVIVQ 120
           RW+VVE+    +E+P +EI+ EAA +++  +Q+G++IED+IESV FDRITTQTAKQVIVQ
Sbjct: 61  RWLVVEN----VEHPTKEISFEAASFDDDSVQLGDYIEDQIESVTFDRITTQTAKQVIVQ 116

Query: 121 KVREAERAQVVEQFYDKEGEIITGVVKKSNRDSVIVDLGNNADGVLYKEDLIARESFRPG 180
           KVREAERAQ+VEQF D EGE++TGVVKK NR++VI+DLGNNA+ V+ +ED + RE+FRPG
Sbjct: 117 KVREAERAQIVEQFIDNEGELVTGVVKKVNRETVILDLGNNAEAVILREDQLPRENFRPG 176

Query: 181 DRVRALLYAVRPEARGAQLYLTRTKPEMLIELFRVEVPEIADEMIQVMGAARDPGSRAKI 240
           DRVR LLY V PEARG QL++TR+KPEML ELFRVEVPEI +E+I++  AARDPGSRAKI
Sbjct: 177 DRVRGLLYKVAPEARGFQLFITRSKPEMLAELFRVEVPEIGEELIELKAAARDPGSRAKI 236

Query: 241 AVKSNDRRIDPIGACVGMRGARVQAVSNELGGERVDIVLWDDNPAQFVINAMAPADVASI 300
           AVK+ND+RIDP+GACVGMRGARVQAVS ELGGER+DIVLWDDNPAQFVINAMAPADVASI
Sbjct: 237 AVKTNDKRIDPVGACVGMRGARVQAVSGELGGERIDIVLWDDNPAQFVINAMAPADVASI 296

Query: 301 IVDEDNHSMDIAVEADSLAQAIGRNGQNVRLATQLTGWELNVMTVADMNAKHQAESAKVV 360
           I+DED HSMDIAVEAD+LAQAIGRNGQNVRLA+QLTGWELNVMTVAD+  KHQ ES   +
Sbjct: 297 IMDEDAHSMDIAVEADNLAQAIGRNGQNVRLASQLTGWELNVMTVADLQKKHQEESMASI 356

Query: 361 ALFMASLDVDEDFAQVLADEGFTSLEEVAYVPVAELLAIDGFDEDIVEALRERAKAAIST 420
             FM  LD+++DFA++L +EGF++LEE+AYVP+ ELL +DG DED+ + LR RAK A++T
Sbjct: 357 ENFMKYLDIEQDFAELLVEEGFSTLEEIAYVPMNELLDVDGMDEDLADELRSRAKEALTT 416

Query: 421 RALASEEALDGAEPSEELLNLEGMDRHLAFVLASRGVVTLEDLAEQGIDDLIEIEELTEE 480
            ALA EE+ +G EP+E+LL L G++R +AF LA++GV TLEDLA+QG+DDL  IE LTE+
Sbjct: 417 IALAKEESFEGLEPAEDLLALAGLERDMAFKLAAKGVATLEDLADQGVDDLEGIEGLTEQ 476

Query: 481 KAGALIMAARNICWFGEES 499
           +AG LIMAARNICWFGE++
Sbjct: 477 RAGELIMAARNICWFGEDA 495