Pairwise Alignments

Query, 499 a.a., transcription elongation factor NusA (RefSeq) from Shewanella amazonensis SB2B

Subject, 537 a.a., transcription termination factor NusA from Rhodopseudomonas palustris CGA009

 Score =  393 bits (1009), Expect = e-113
 Identities = 213/483 (44%), Positives = 309/483 (63%), Gaps = 10/483 (2%)

Query: 4   EILLVAEAVSNEKAVPREKIFEALETALATATKKKYEGDIDVRVAIDRKTGDYETFRRWM 63
           E+L +A+AV+ EK + R  +  A+E A+A A + +Y  + DV   ID K G+    R  +
Sbjct: 9   ELLQIADAVAREKTIDRSIVIAAMEDAIAKAARARYGSETDVHAEIDPKKGELRLSRHML 68

Query: 64  VVEDNGEALENPYREITLEAAQYENPEIQVGEFIEDEIESVVFDRITTQTAKQVIVQKVR 123
           VVE     +ENP  +I+L+ AQ  NP  Q+G+ I D +  + + RI  Q+AKQVIVQKVR
Sbjct: 69  VVEQ----VENPANQISLKDAQRANPGAQIGDTIADTLPPLEYGRIAAQSAKQVIVQKVR 124

Query: 124 EAERAQVVEQFYDKEGEIITGVVKKSNRDSVIVDLGNNADGVLYKEDLIARESFRPGDRV 183
           EAER +   +F D+ G+I+ GVVK+    SVIVDLG   + ++ +++++ RESFR GDRV
Sbjct: 125 EAERDRQYMEFKDRIGDIVNGVVKRVEYGSVIVDLGRG-EAIIRRDEMLPRESFRNGDRV 183

Query: 184 RALLYAVRPEARGAQLYLTRTKPEMLIELFRVEVPEIADEMIQVMGAARDPGSRAKIAVK 243
           RA ++ VR E RG Q++L+RT P+ + +LF  EVPEI D ++++   ARDPGSRAKI V 
Sbjct: 184 RAYVFDVRRETRGPQIFLSRTHPQFMAKLFAQEVPEIYDGIVEIKAVARDPGSRAKIGVV 243

Query: 244 SNDRRIDPIGACVGMRGARVQAVSNELGGERVDIVLWDDNPAQFVINAMAPADVASIIVD 303
           S D  +DP+GACVGMRG+RVQAV NEL GE++DI+ W  + A FV+NA+APA+V+ +++D
Sbjct: 244 SRDSSVDPVGACVGMRGSRVQAVVNELQGEKIDIIPWSPDIATFVVNALAPAEVSKVVID 303

Query: 304 EDNHSMDIAV--EADSLAQAIGRNGQNVRLATQLTGWELNVMTVADMNAKHQAESAKVVA 361
           ED   +++ V    + L+ AIGR GQNVRLA+QLTGW+++++T ++ + + QA+  K   
Sbjct: 304 EDRERIEVVVPDTNNQLSLAIGRRGQNVRLASQLTGWDIDILTESEESERRQADFEKTTR 363

Query: 362 LFMASLDVDEDFAQVLADEGFTSLEEVAYVPVAELLAIDGFDEDIVEALRERAKAAISTR 421
            FM +L+VDE   Q+LA EGFTS+EE+A V   EL +I+GFDE+    L+ RA   +   
Sbjct: 364 AFMDALNVDEVVGQLLASEGFTSVEELALVDPRELASIEGFDEETAAELQTRASEYLDRI 423

Query: 422 ALASEEALDGAEPSEELLNLEGMDRHLAFVLASRGVVTLEDLAEQGIDDLIEIEELTEEK 481
               E         + L ++ G+   +        V T+EDLA    DDL+     TE K
Sbjct: 424 ESELEARRLELGVEDALKDVPGVTSKMLVKFGENDVKTVEDLAGCATDDLV---GWTERK 480

Query: 482 AGA 484
            GA
Sbjct: 481 DGA 483