Pairwise Alignments

Query, 499 a.a., transcription elongation factor NusA (RefSeq) from Shewanella amazonensis SB2B

Subject, 493 a.a., transcription termination factor NusA from Pseudomonas sp. BP01

 Score =  625 bits (1612), Expect = 0.0
 Identities = 326/495 (65%), Positives = 401/495 (81%), Gaps = 3/495 (0%)

Query: 1   MNKEILLVAEAVSNEKAVPREKIFEALETALATATKKKYEGDIDVRVAIDRKTGDYETFR 60
           M+KE+LLV E+VSNEK VP   IFEALE ALATATKK++E ++D+RV I+R TG YETFR
Sbjct: 1   MSKEVLLVVESVSNEKGVPPGVIFEALEVALATATKKRFEDEVDLRVEINRHTGSYETFR 60

Query: 61  RWMVVEDNGEALENPYREITLEAAQYENPEIQVGEFIEDEIESVVFDRITTQTAKQVIVQ 120
           RW VV++    L++P  E  L+  +  +PE ++G+ IE++IES+ F RI  QTAKQVIVQ
Sbjct: 61  RWTVVDEAD--LDDPAIETWLDKIKDTHPEAKIGDVIEEKIESIEFGRIAAQTAKQVIVQ 118

Query: 121 KVREAERAQVVEQFYDKEGEIITGVVKKSNRDSVIVDLGNNADGVLYKEDLIARESFRPG 180
           KVREAERAQVV+ + ++ GEII+G VKK  RD+VIVDLGNNA+ +L +ED+I RE+FR G
Sbjct: 119 KVREAERAQVVDAYRERVGEIISGTVKKVTRDNVIVDLGNNAEALLAREDIIPRETFRVG 178

Query: 181 DRVRALLYAVRPEARGAQLYLTRTKPEMLIELFRVEVPEIADEMIQVMGAARDPGSRAKI 240
            R+RALL  +R E RG QL L+RT P+MLIELFR+EVPEIA+ +I+VM A+RDPGSRAKI
Sbjct: 179 VRLRALLKEIRTENRGPQLILSRTAPQMLIELFRIEVPEIAEGLIEVMAASRDPGSRAKI 238

Query: 241 AVKSNDRRIDPIGACVGMRGARVQAVSNELGGERVDIVLWDDNPAQFVINAMAPADVASI 300
           AV+S D+RIDP GAC+GMRG+RVQAVS ELGGERVDIVLWDDNPAQFVINAM+PA+VA+I
Sbjct: 239 AVRSKDKRIDPQGACIGMRGSRVQAVSGELGGERVDIVLWDDNPAQFVINAMSPAEVAAI 298

Query: 301 IVDEDNHSMDIAVEADSLAQAIGRNGQNVRLATQLTGWELNVMTVADMNAKHQAESAKVV 360
           IVDED H+MDIAV  D+LAQAIGR GQNVRLA+QLTGW LNVMT  D+ AK QAE+  ++
Sbjct: 299 IVDEDAHAMDIAVAEDNLAQAIGRGGQNVRLASQLTGWTLNVMTEKDIQAKQQAETGDIL 358

Query: 361 ALFMASLDVDEDFAQVLADEGFTSLEEVAYVPVAELLAIDGFDEDIVEALRERAKAAIST 420
             F+  L+VDE+ AQVL DEGFTSLEE+AYVP+ E+L IDGFDEDIV  LR RAK  + T
Sbjct: 359 RNFIDELEVDEELAQVLVDEGFTSLEEIAYVPLEEMLNIDGFDEDIVNELRARAKDRLLT 418

Query: 421 RALASEEALDGAEPSEELLNLEGMDRHLAFVLASRGVVTLEDLAEQGIDDLIEIEELTEE 480
           +A+A+EE L  A P+E+LL+LEGMD+ LA  LA RGVV  EDLAEQ IDDL++I+ + EE
Sbjct: 419 KAIATEEKLADAHPAEDLLSLEGMDKDLAAELAVRGVVNREDLAEQSIDDLLDIDGIDEE 478

Query: 481 KAGALIMAARNICWF 495
           +AG LIMAAR   WF
Sbjct: 479 RAGKLIMAAR-AHWF 492