Pairwise Alignments

Query, 499 a.a., transcription elongation factor NusA (RefSeq) from Shewanella amazonensis SB2B

Subject, 443 a.a., transcription elongation factor NusA (RefSeq) from Desulfovibrio vulgaris Miyazaki F

 Score =  287 bits (734), Expect = 6e-82
 Identities = 156/438 (35%), Positives = 267/438 (60%), Gaps = 15/438 (3%)

Query: 1   MNKEILLVAEAVSNEKAVPREKIFEALETALATATKKKYEGDIDVRVAIDRKTGDYETFR 60
           M+ E+    + +S +K + R+ + + LE A+ T+  +K+  ++D  V+ + +TG+ + ++
Sbjct: 1   MSLELKKAIDQISKDKGLDRDMLIDTLEEAVRTSVARKFGDEMDAEVSYNDETGEIDVYQ 60

Query: 61  RWMVVEDNGEALENPYREITLEAAQYENPEIQVGEFIEDEIESVVFDRITTQTAKQVIVQ 120
             +VV+     +ENP  EI+LE A+  +P +Q+ + +   ++     RI  Q+AKQVI+Q
Sbjct: 61  FKIVVKK----VENPNSEISLEDARTHDPSVQLDDEMGFRVKIEDLGRIAAQSAKQVIIQ 116

Query: 121 KVREAERAQVVEQFYDKEGEIITGVVKKSNRDSVIVDLGNNADGVLYKEDLIARESFRPG 180
           ++R+AE+  + E++ D+ GEI++G++++ ++   I++LG   + +L KE+ I RE ++ G
Sbjct: 117 RMRDAEQEIIYEEYKDRRGEIVSGIIQRRDKAGWIINLGRT-EALLPKEEQIPREHYKRG 175

Query: 181 DRVRALLYAVRPEARGAQLYLTRTKPEMLIELFRVEVPEIADEMIQVMGAARDPGSRAKI 240
           DRV+A+L  VR E RG Q+ ++R   + +  LFR EVPE+ D  +Q+MG +RDPGSRAK 
Sbjct: 176 DRVQAILIDVRKEGRGPQVIVSRAHRDYMAALFRREVPEVDDGTVQIMGVSRDPGSRAKA 235

Query: 241 AVKSNDRRIDPIGACVGMRGARVQAVSNELGGERVDIVLWDDNPAQFVINAMAPADVASI 300
           AV S DR +DP+GACVG+RG+R+Q +  E+ GER+DIV+W  + A +  NA++PA ++ I
Sbjct: 236 AVMSRDRDVDPVGACVGIRGSRIQNIVQEMRGERIDIVVWSPDIATYARNALSPAVISRI 295

Query: 301 IVDEDNHSMDIAVEADSLAQAIGRNGQNVRLATQLTGWELNVMTVADMNAKHQAESAKVV 360
           +VDE+ + +++ V  D L  AIGR GQNV+LA +L GW++++ T    N  +        
Sbjct: 296 VVDEEENLLEVIVPDDQLTNAIGRKGQNVKLAAKLLGWKIDIYTETRYNEANAIGRGLEQ 355

Query: 361 ALFMASLDVDEDFAQVLADEGFTSLEEVAYVPVAELLAIDGFDEDIVEALRERAKAAIST 420
              +A + +++  A      GF S+E +      EL +  G     +  LR    AAI+ 
Sbjct: 356 IASVAEISIEQFIA-----AGFQSIERLREADDEELASALGLAPGKIADLR----AAINF 406

Query: 421 RALASEEALDG-AEPSEE 437
            A  +++  D  AEP  E
Sbjct: 407 LAPQAQDDADATAEPDAE 424