Pairwise Alignments

Query, 499 a.a., transcription elongation factor NusA (RefSeq) from Shewanella amazonensis SB2B

Subject, 495 a.a., transcription termination factor NusA from Lysobacter sp. OAE881

 Score =  554 bits (1428), Expect = e-162
 Identities = 286/496 (57%), Positives = 373/496 (75%), Gaps = 3/496 (0%)

Query: 1   MNKEILLVAEAVSNEKAVPREKIFEALETALATATKKKY-EGDIDVRVAIDRKTGDYETF 59
           M+KE+LLV +AV+NEK VPRE IFEA+E ALA+A KK+Y + D+ VRV ID+K G YETF
Sbjct: 1   MSKELLLVVDAVANEKGVPREVIFEAIEAALASAAKKRYHDEDVLVRVTIDQKDGSYETF 60

Query: 60  RRWMVVEDNGEALENPYREITLEAAQYENPEIQVGEFIEDEIESVVFDRITTQTAKQVIV 119
           RR  VV D+   +E+P R++ L  A  E   ++VG++IE++IE+  F RI  Q AKQVIV
Sbjct: 61  RRMEVVADD-VVMESPDRQVRLMDAIDEVEGVEVGDYIEEQIENPEFGRIAAQAAKQVIV 119

Query: 120 QKVREAERAQVVEQFYDKEGEIITGVVKKSNRDSVIVDLGNNADGVLYKEDLIARESFRP 179
           Q+VREAER QVV+ + D+ GE++TGVVK+  R ++ VDLG NA+ ++ K+  I R+  R 
Sbjct: 120 QRVREAERQQVVDAWKDRVGELVTGVVKRVERGNIYVDLGGNAEAIIPKDKGIPRDVLRT 179

Query: 180 GDRVRALLYAVRPEARGAQLYLTRTKPEMLIELFRVEVPEIADEMIQVMGAARDPGSRAK 239
           GDRVR  L+ VR E RG QL+++R  PE ++ELF++EVPE+   ++ +   ARDPG RAK
Sbjct: 180 GDRVRGYLFDVRSEPRGPQLFISRAAPEFMMELFKLEVPEVGQGLVSIKACARDPGDRAK 239

Query: 240 IAVKSNDRRIDPIGACVGMRGARVQAVSNELGGERVDIVLWDDNPAQFVINAMAPADVAS 299
           IAV ++D R DPIGAC+GMRG+RVQAVSNEL GERVDIVLW DNPAQFVINAMAPA+V S
Sbjct: 240 IAVVAHDNRTDPIGACIGMRGSRVQAVSNELNGERVDIVLWSDNPAQFVINAMAPAEVQS 299

Query: 300 IIVDEDNHSMDIAVEADSLAQAIGRNGQNVRLATQLTGWELNVMTVADMNAKHQAESAKV 359
           IIVDE+ HSMD+AV  D LAQAIG+ GQNVRLA++L+GW+LNVMT   + AK +AE A  
Sbjct: 300 IIVDEEKHSMDLAVAEDRLAQAIGKGGQNVRLASRLSGWQLNVMTQDQVTAKSEAEQASA 359

Query: 360 VALFMASLDVDEDFAQVLADEGFTSLEEVAYVPVAELLAIDGFDEDIVEALRERAKAAIS 419
             LF   L+VDE+ A +L  EGF+++EE+AYVPV ELLA++GFDEDIVE LR RA+ A+ 
Sbjct: 360 RQLFQDKLEVDEEIAGILVSEGFSTVEEIAYVPVGELLAVEGFDEDIVEELRSRARDALL 419

Query: 420 TRALASEEALDGAEPSEELLNLEGMDRHLAFVLASRGVVTLEDLAEQGIDDLIEIEELTE 479
             ALA+EE LD  +P+ +LL L+GMD   A+ LA+RGVVT +DLA+   D+L ++E + E
Sbjct: 420 NEALAAEEELDEHQPAADLLELDGMDEATAYALAARGVVTRDDLADMATDELTDVEGIDE 479

Query: 480 EKAGALIMAARNICWF 495
            +A ALIM AR   WF
Sbjct: 480 ARAAALIMEARK-HWF 494