Pairwise Alignments

Query, 499 a.a., transcription elongation factor NusA (RefSeq) from Shewanella amazonensis SB2B

Subject, 543 a.a., NusA antitermination factor from Sphingomonas koreensis DSMZ 15582

 Score =  394 bits (1013), Expect = e-114
 Identities = 218/522 (41%), Positives = 324/522 (62%), Gaps = 33/522 (6%)

Query: 4   EILLVAEAVSNEKAVPREKIFEALETALATATKKKYEGDIDVRVAIDRKTGDYETFRRWM 63
           E++ +A +V++EK + +  + EA+E A+  A K +Y  + D+R  +D +TGD    R W 
Sbjct: 11  ELIAIANSVASEKMIDKSIVIEAMEEAIERAAKNRYGVENDIRAKLDPQTGD---LRLWR 67

Query: 64  VVEDNGEALENPYREITLEAAQYENPEIQVGEFIEDEIESVVFDRITTQTAKQVIVQKVR 123
           VVE   EA+++ ++++ L+ AQ    + +VG+FI D +  + F RI  Q +KQ+I QKVR
Sbjct: 68  VVEVV-EAVDDYFKQVDLKGAQKLQKDAKVGDFIVDPLPPIEFGRIQAQASKQIIFQKVR 126

Query: 124 EAERAQVVEQFYDKEGEIITGVVKKSNRDSVIVDLGNNADGVLYKEDLIARESFRPGDRV 183
           +AER +  E+F D++GEIITGVVK+     V+VDLG  A+GV+ ++  I RE  R GDRV
Sbjct: 127 DAERERQFEEFKDRQGEIITGVVKRVEFGHVVVDLGR-AEGVIRRDAQIPREVVRVGDRV 185

Query: 184 RALLYAVRPEARGAQLYLTRTKPEMLIELFRVEVPEIADEMIQVMGAARDPGSRAKIAVK 243
           R+L+  V  E RG Q++L+R  P+ + +LF  EVPEI D +I++  AARDPGSRAKI V 
Sbjct: 186 RSLILKVVRETRGPQIFLSRAHPDFMKKLFAQEVPEIYDGIIEIKAAARDPGSRAKIGVI 245

Query: 244 SNDRRIDPIGACVGMRGARVQAVSNELGGERVDIVLWDDNPAQFVINAMAPADVASIIVD 303
           S+D  IDP+GACVGM+G+RVQAV  E+ GE++DI+ W  + A FV+NA+ PA+VA +++D
Sbjct: 246 SHDSSIDPVGACVGMKGSRVQAVVQEMQGEKIDIIPWSPDTATFVVNALQPANVARVVID 305

Query: 304 EDNHSMDIAVEADSLAQAIGRNGQNVRLATQLTGWELNVMTVADMNAKHQAESAKVVALF 363
           E++  +++ V  D L+ AIGR GQNVRLA+QLTG  ++++T  D + K QAE      +F
Sbjct: 306 EEDDRIEVVVPDDQLSLAIGRRGQNVRLASQLTGKAIDILTETDSSEKRQAEFVANSEMF 365

Query: 364 MASLDVDEDFAQVLADEGFTSLEEVAYVPVAELLAIDGFDEDIVEALRERAKAAISTRAL 423
              LDVDE  AQ+L  EGF+ LEEVAYV + EL  I+GFDED+ + L+ RA  A+  R  
Sbjct: 366 QNELDVDETLAQLLVAEGFSQLEEVAYVELDELAGIEGFDEDLAQELQSRAAEALERREE 425

Query: 424 ASEEALDGAEPSEELLNLEGMDRHLAFVLASRGVVTLEDLAEQGIDDLIEIEE------- 476
           A+  A       ++L  +  +   +   L   G+ TL+DLA+   D+L+  +        
Sbjct: 426 ANRTARRELGVEDDLATMPYLTEAMLVTLGKAGIKTLDDLADLATDELVAKKRPEPRRRG 485

Query: 477 --------------------LTEEKAGALIMAARNICWFGEE 498
                               L++E+   +IMAAR   WF +E
Sbjct: 486 DGPAAPVRESDKGGVLGEYGLSDEQGNEIIMAAR-AHWFADE 526