Pairwise Alignments

Query, 499 a.a., transcription elongation factor NusA (RefSeq) from Shewanella amazonensis SB2B

Subject, 499 a.a., transcription termination factor NusA from Dyella japonica UNC79MFTsu3.2

 Score =  558 bits (1437), Expect = e-163
 Identities = 285/491 (58%), Positives = 373/491 (75%), Gaps = 4/491 (0%)

Query: 1   MNKEILLVAEAVSNEKAVPREKIFEALETALATATKKKY-EGDIDVRVAIDRKTGDYETF 59
           M+KE+LLV +AV+NEK VPRE IF+A+E ALA+A KK+Y + D ++RV+IDR+ G+YETF
Sbjct: 1   MSKELLLVVDAVANEKGVPREVIFQAMEAALASAAKKRYPDEDPNIRVSIDRQNGEYETF 60

Query: 60  RRWMVVEDNGEALENPYREITLEAAQYENPEIQVGEFIEDEIESVVFDRITTQTAKQVIV 119
           RRW ++ D+GE +E+PY ++ L  A  E  + Q+GE+IE +IE+  F RI  Q AKQVIV
Sbjct: 61  RRWEIIADDGE-MESPYHQLRLMDAVDEREDAQIGEYIETQIENAEFGRIAAQAAKQVIV 119

Query: 120 QKVREAERAQVVEQFYDKEGEIITGVVKKSNRDSVIVDLGNNADGVLYKEDLIARESFRP 179
           Q+VREAER QVV+ + D+ GE+ITG+VK+  R +V +DLG NA+  + ++  I RES R 
Sbjct: 120 QRVREAERQQVVDAYKDRVGELITGIVKRVERGNVYLDLGGNAEAFIPRDKTIPRESHRV 179

Query: 180 GDRVRALLYAVRPEARGAQLYLTRTKPEMLIELFRVEVPEIADEMIQVMGAARDPGSRAK 239
           GDRVR  L  V+ E RG QL+++R  PE +IELF++EVPE+   ++++ G ARDPG RAK
Sbjct: 180 GDRVRGYLAEVKSEIRGPQLFVSRAAPEFMIELFKLEVPEVGQGLVEIKGCARDPGDRAK 239

Query: 240 IAVKSNDRRIDPIGACVGMRGARVQAVSNELGGERVDIVLWDDNPAQFVINAMAPADVAS 299
           IAV ++D R DPIGAC+GMRG+RVQAVSNEL GERVDI+ W +N AQ+VINAMAPA+V S
Sbjct: 240 IAVVAHDSRTDPIGACIGMRGSRVQAVSNELNGERVDIITWHENQAQYVINAMAPAEVQS 299

Query: 300 IIVDEDNHSMDIAVEADSLAQAIGRNGQNVRLATQLTGWELNVMTVADMNAKHQAESAKV 359
           II+DE+ HSMDIAV  D L+QAIGR GQNVRLA++LTGW+LNVMT   + AK +AE    
Sbjct: 300 IIMDEEKHSMDIAVAEDKLSQAIGRGGQNVRLASKLTGWQLNVMTQDQVAAKSEAEQEAA 359

Query: 360 VALFMASLDVDEDFAQVLADEGFTSLEEVAYVPVAELLAIDGFDEDIVEALRERAKAAIS 419
             LFM  L+VD++ A +L  EGF+S+EE+AYVP AELLA++GFDEDIVE LR RA+ A+ 
Sbjct: 360 RQLFMEKLEVDQEIANILVQEGFSSIEEIAYVPSAELLAVEGFDEDIVEELRARARDALL 419

Query: 420 TRALASEEALDGAEPSEELLNLEGMDRHLAFVLASRGVVTLEDLAEQGIDDLIEIEELTE 479
           T ALA EE ++  EPSEELL L GM   +A+ LA R V TL+DLA+  +DDLI+IE + E
Sbjct: 420 TEALAVEEGVN--EPSEELLALPGMSESIAYALAEREVATLDDLADLAVDDLIDIEGVDE 477

Query: 480 EKAGALIMAAR 490
           + A  LIM AR
Sbjct: 478 DLAAKLIMEAR 488