Pairwise Alignments

Query, 499 a.a., transcription elongation factor NusA (RefSeq) from Shewanella amazonensis SB2B

Subject, 544 a.a., NusA antitermination factor (RefSeq) from Dinoroseobacter shibae DFL-12

 Score =  417 bits (1071), Expect = e-121
 Identities = 237/513 (46%), Positives = 333/513 (64%), Gaps = 21/513 (4%)

Query: 4   EILLVAEAVSNEKAVPREKIFEALETALATATKKKYEGDIDVRVAIDRKTGDYETFRRWM 63
           E+L  AEAV+ EK +    + EA+E +LA A K +Y  ++D+RV+IDRKTG     R   
Sbjct: 10  ELLQTAEAVAREKMIDPGLVIEAMEESLARAAKSRYGSEMDIRVSIDRKTGVATFTRVRT 69

Query: 64  VVEDNGEALENPYREITLEAAQYENPEIQVGEFIEDEIESVVFDRITTQTAKQVIVQKVR 123
           VVED  E LEN   E+T+E A+    + +VG+ I D++  V   RI  Q+AKQVI+QKVR
Sbjct: 70  VVED--EELENYQAELTVEQAKPYLDDPKVGDTIVDQVPPVEMGRIAAQSAKQVILQKVR 127

Query: 124 EAERAQVVEQFYDKEGEIITGVVKKSNRDSVIVDLGNNADGVLYKEDLIARESFRPGDRV 183
           EAER +  E+F D+ G II GVVK+    +VIVD+G   +GVL + + I RES+RP DR+
Sbjct: 128 EAERDRQYEEFKDRAGTIINGVVKREEYGNVIVDIGRG-EGVLRRNEKIGRESYRPNDRI 186

Query: 184 RALLYAVRPEARGAQLYLTRTKPEMLIELFRVEVPEIADEMIQVMGAARDPGSRAKIAVK 243
           R  +  VR E RG Q++L+RT PE + ELF++EVPEI D +I++   ARDPGSRAKIAV 
Sbjct: 187 RCYIKDVRREVRGPQIFLSRTAPEFMAELFKMEVPEIYDGIIEIKAVARDPGSRAKIAVI 246

Query: 244 SNDRRIDPIGACVGMRGARVQAVSNELGGERVDIVLWDDNPAQFVINAMAPADVASIIVD 303
           S D  IDP+GACVGMRG+RVQAV NEL GE++DI+ W+++   F++NA+ PA+V+ +++D
Sbjct: 247 SYDGSIDPVGACVGMRGSRVQAVVNELQGEKIDIIPWNEDQPTFLVNALQPAEVSKVVLD 306

Query: 304 EDNHSMDIAVEADSLAQAIGRNGQNVRLATQLTGWELNVMTVADMNAKHQAESAKVVALF 363
           ED   +++ V  + L+ AIGR GQNVRLA+QLTG ++++MT A  + + QAE A+   +F
Sbjct: 307 EDAERIEVVVPDEQLSLAIGRRGQNVRLASQLTGLDIDIMTEAQESERRQAEFAERTNMF 366

Query: 364 MASLDVDEDFAQVLADEGFTSLEEVAYVPVAELLAIDGFDEDIVEALRERAKAAISTRAL 423
           + +LDVDE  AQ+L  EGFT+LEEVAYV   ELL IDGFDED  E L+ RA+  +  +A 
Sbjct: 367 VEALDVDEVLAQLLVSEGFTNLEEVAYVEQEELLVIDGFDEDTAEELQTRAREFLEEQAK 426

Query: 424 ASEEALDGAEPSEELLNLEGMDRHLAFVLASRGVVTLEDLA----------------EQG 467
            + E        + L+  EG+   +   LA+ GV TLED A                E+ 
Sbjct: 427 KALERAREMGVEDSLVEFEGLTPQMLEALAADGVKTLEDFATCADWELAGGWTTVDGERV 486

Query: 468 IDD-LIEIEELTEEKAGALIMAAR-NICWFGEE 498
            D+ ++E  +++ E+A  L+M AR  + W   E
Sbjct: 487 KDEGVLEKFDVSLEEAQLLVMTARVQLGWVNPE 519