Pairwise Alignments

Query, 499 a.a., transcription elongation factor NusA (RefSeq) from Shewanella amazonensis SB2B

Subject, 491 a.a., transcription termination factor NusA from Cupriavidus basilensis FW507-4G11

 Score =  499 bits (1284), Expect = e-145
 Identities = 255/495 (51%), Positives = 366/495 (73%), Gaps = 5/495 (1%)

Query: 1   MNKEILLVAEAVSNEKAVPREKIFEALETALATATKKKYEGDIDVRVAIDRKTGDYETFR 60
           M++E+LL+ +A++ EK V ++ +F ALE ALA+ATKK++E D+D+RVAIDR++G++ETFR
Sbjct: 1   MSREVLLLVDALAREKNVDKDVVFGALEAALASATKKRFEEDVDIRVAIDRESGEHETFR 60

Query: 61  RWMVVEDNGEALENPYREITLEAAQYENPEIQVGEFIEDEIESVVFDRITTQTAKQVIVQ 120
           RW+VV D  + L+ P ++I +  A+ ++P+IQ+ EF+E++IESV F RI  Q AKQVI+Q
Sbjct: 61  RWLVVPDE-QGLQEPDKQILMFEAREQDPDIQLDEFVEEQIESVEFGRIGAQAAKQVILQ 119

Query: 121 KVREAERAQVVEQFYDKEGEIITGVVKKSNRDSVIVDLGNNADGVLYKEDLIARESFRPG 180
           K+R+AER Q++  + D+  +++TG VK++++  +IV+ G   + +L ++ +I +E+ R G
Sbjct: 120 KIRDAEREQILNDYLDRGEKVMTGTVKRADKKGLIVESGR-VEALLARDQIIPKENLRTG 178

Query: 181 DRVRALLYAVRPEARGAQLYLTRTKPEMLIELFRVEVPEIADEMIQVMGAARDPGSRAKI 240
           DRVRA +  V   ARG Q+ L+RT PE LI+LF  EVPE+   ++++  AARDPG RAKI
Sbjct: 179 DRVRAYILNVDRTARGPQIELSRTAPEFLIKLFENEVPEMEQGLLEIKAAARDPGVRAKI 238

Query: 241 AVKSNDRRIDPIGACVGMRGARVQAVSNELGGERVDIVLWDDNPAQFVINAMAPADVASI 300
           AV ++D+RIDPIG CVG+RG RV AV NE+GGE VDIVLW ++PAQFVI A+APA V SI
Sbjct: 239 AVVAHDKRIDPIGTCVGVRGTRVTAVRNEIGGEAVDIVLWSEDPAQFVIGALAPAQVQSI 298

Query: 301 IVDEDNHSMDIAVEADSLAQAIGRNGQNVRLATQLTGWELNVMTVADMNAKHQAESAKVV 360
           +VDE+ HSMD+ V+ ++LA AIGR+GQNVRLA++LTGW++N+MT  +   K   ES  V 
Sbjct: 299 VVDEEKHSMDVVVDEENLAVAIGRSGQNVRLASELTGWQINIMTQEESAQKQAEESDVVR 358

Query: 361 ALFMASLDVDEDFAQVLADEGFTSLEEVAYVPVAELLAIDGFDEDIVEALRERAKAAIST 420
            LFMA LDVDE+ A +L DEGF++LEEVAYVP++E+L ID FDED V  LR RA+ A+ T
Sbjct: 359 KLFMAKLDVDEEVADILIDEGFSTLEEVAYVPISEMLEIDAFDEDTVNELRNRARDALLT 418

Query: 421 RALASEEALDGAEPSEELLNLEGMDRHLAFVLASRGVVTLEDLAEQGIDDLIEIEELTEE 480
             LA EE ++  E S++L +L+G+   L   LA   + T ++LAE  +D+L+++  L E+
Sbjct: 419 MELAREEKVE--EVSQDLRSLDGLTPELIGKLAEGNIHTRDELAELAVDELVDMVGLGED 476

Query: 481 KAGALIMAARNICWF 495
            A ALIM AR   WF
Sbjct: 477 DARALIMKARE-HWF 490