Pairwise Alignments

Query, 207 a.a., hypothetical protein (RefSeq) from Shewanella amazonensis SB2B

Subject, 213 a.a., putative transporter, required for glycine and L-alanine utilization (from data) from Shewanella sp. ANA-3

 Score =  162 bits (411), Expect = 3e-45
 Identities = 86/204 (42%), Positives = 130/204 (63%), Gaps = 11/204 (5%)

Query: 9   LCGTAVFALTGALAAGRHRMDPFGVTVLAAVTAVGGGTIRDAIIGATPVFWLRDPNYLIV 68
           L G    A+TGALAAGR +MD FGV ++   TA+GGGT+RD ++G  P+ W+ + +YL+ 
Sbjct: 12  LIGILAEAMTGALAAGRKQMDLFGVVIIGCATAIGGGTLRDMLLGNYPLIWVENVHYLLA 71

Query: 69  ILATVGFTLVFIRRPRKVPQYTLPIADALGLALFTVIGAQKALSLGLNGMSAVIMGLITG 128
           I      T+      R + +  L I DALGLA+F+++GAQK L LG +   AV+MGL+TG
Sbjct: 72  IAFASLLTVAIAPVMRYLSKLFLAI-DALGLAVFSIVGAQKTLMLGFSPTIAVVMGLVTG 130

Query: 129 VGGGIIRDVLCRQIPMVLRTEIYATASILGGIAYTLSLQLGMNS-QTALWLSMLSALI-- 185
           V GG+IRD+LC Q+P++ + E+YA  S+     +T  L + +N+ Q A W++++  L   
Sbjct: 131 VFGGVIRDILCNQVPLIFKKELYAVISL-----FTAGLYITLNAYQLAEWINLVVCLTLG 185

Query: 186 --LRLAAIRWHLSLPAFDLKTRRD 207
             LR+ A+R+H S+P FD +   D
Sbjct: 186 FSLRMLALRYHWSMPTFDYQANGD 209



 Score = 38.1 bits (87), Expect = 1e-07
 Identities = 23/71 (32%), Positives = 33/71 (46%), Gaps = 1/71 (1%)

Query: 4   FYFFDLCGTAVFALTGALAAGRHRMDPFGVTVLAAVTAVGGGTIRDAIIGATPVFWLRDP 63
           F   D  G AVF++ GA         P    V+  VT V GG IRD +    P+ + ++ 
Sbjct: 93  FLAIDALGLAVFSIVGAQKTLMLGFSPTIAVVMGLVTGVFGGVIRDILCNQVPLIFKKE- 151

Query: 64  NYLIVILATVG 74
            Y ++ L T G
Sbjct: 152 LYAVISLFTAG 162