Pairwise Alignments

Query, 355 a.a., outer membrane porin, putative (RefSeq) from Shewanella amazonensis SB2B

Subject, 352 a.a., porin (RefSeq) from Shewanella loihica PV-4

 Score =  488 bits (1256), Expect = e-142
 Identities = 238/356 (66%), Positives = 290/356 (81%), Gaps = 5/356 (1%)

Query: 1   MKKSLIASAVATGAALSSFATLADGPAFYGRVDLAATNSNTGYATQNQKDGTVFENNFSW 60
           MKKS++++++    A +SF  LADGP FYGR DLA T+S+ G ATQNQKDGT+ ENNFSW
Sbjct: 1   MKKSVLSASIFATLAATSFTALADGPQFYGRADLAFTHSDNGIATQNQKDGTIIENNFSW 60

Query: 61  LGVKGSEKLSQNVALIYQMEFGVNNFDNSGDTFNTRNTFVGLQTQAGTALIGRNDSVFKQ 120
           LGVKGSEK++  + +IYQMEFGV+N+DNSG+TF  RNT++GL++  GTAL+GRND+VFK 
Sbjct: 61  LGVKGSEKVADGLEVIYQMEFGVSNYDNSGNTFAARNTYLGLRSVIGTALVGRNDTVFKA 120

Query: 121 SEGGFDLFGNTNADIDLLVAGQSRLGDSITYYSPKIAHILTLNATYVMEDNYEEGSWFNP 180
           SEGGFDLFGNTN+DIDLL AGQSR  D ITYYSPKIA ++TLNATY++EDNY        
Sbjct: 121 SEGGFDLFGNTNSDIDLLAAGQSRTADGITYYSPKIADLITLNATYLVEDNYVT----YK 176

Query: 181 GEDDEWSGNTYALSATLGDKALKAQNYYVAAAYNDGLDGIKAYRGVAQVKFGELVLGALY 240
            E      N YALSATLGDKALKAQNYYVAAAYND +D +KAYRGVAQVKFG+++LGALY
Sbjct: 177 DEKRVTPDNMYALSATLGDKALKAQNYYVAAAYNDNIDDVKAYRGVAQVKFGQVILGALY 236

Query: 241 QNSEHVADKYSNLEGDTWFINAGYKLGNTTLKASYGQDDSGLGKYVGRMVGDSD-VGMEQ 299
           QNSEHV  KY+NLEGDT+FINA Y +GN  LKA YG+DDSGLGKYV R VG SD  GME 
Sbjct: 237 QNSEHVDSKYANLEGDTYFINAAYVMGNLKLKAMYGKDDSGLGKYVKRYVGGSDGAGMET 296

Query: 300 VENVDLQQYTLGADHRLSKNTLVYGHFTRFDGDMLLGGNKVSLEDDVITLGLRVDF 355
           V +VDLQQ+++GAD+R+SK+TL YGH+T++DGD+ L G K  L DD++T+G+R DF
Sbjct: 297 VSDVDLQQFSIGADYRISKSTLFYGHYTKYDGDLKLAGMKQDLGDDIVTIGMRFDF 352