Pairwise Alignments

Query, 355 a.a., outer membrane porin, putative (RefSeq) from Shewanella amazonensis SB2B

Subject, 316 a.a., porin (RefSeq) from Shewanella loihica PV-4

 Score =  126 bits (316), Expect = 9e-34
 Identities = 92/335 (27%), Positives = 159/335 (47%), Gaps = 51/335 (15%)

Query: 3   KSLIASAVATGAALSSFATLADGPAFYGRVDLAA-TNSNTGYATQNQKDGTVFENNFSWL 61
           K+L+ASA+AT    S+ A  A+    YG++++ A +N   G AT      T  ++N S  
Sbjct: 7   KTLLASALATATLASAHA--AEPLTVYGKLNVTAQSNDVDGDAT------TTIQSNASRF 58

Query: 62  GVKGSEKLSQNVALIYQMEFGVNNFDNSGDTFNTRNTFVGLQTQAGTALIGRNDSVFKQS 121
           GVKG+ +LS ++   Y +E+ V+  D + + F  RN FVGL+   G   +GRND++ KQS
Sbjct: 59  GVKGAFELSSSLEAFYTVEYEVDTGDAAKENFLARNQFVGLKGNFGAFSVGRNDTMLKQS 118

Query: 122 EGGFDLFGNTNADIDLLVAGQSRLGDSITYYSPKIAHILTLNATYVMEDNYEEGSWFNPG 181
           +G  D F + + D+  L  G++R+  + TY +P  +    +  TY  E           G
Sbjct: 119 QGKVDQFNDLSGDLKHLFKGENRIEQTATYMTPSFSG-FKVGVTYAAE-----------G 166

Query: 182 EDDEWSGNTYALSATLGDKALKAQNYYVAAAYNDGLDGIKAYRGVAQVKFGELVLGALYQ 241
              ++  + ++++A  GD  LK    + + AY+  + G +  R   Q K   L +G +YQ
Sbjct: 167 ASSQYGQDGFSVAAMYGDAKLKKSPIFASIAYDSDVKGYEVVRATVQGKIAGLKIGGMYQ 226

Query: 242 NSE--HVADKYSNLEGDT---WFINAGYKLGNTTLKASY-GQDDSGLGKYVGRMVGDSDV 295
             E  +  D  + +  D+   + ++A Y +    LKA Y   +D G              
Sbjct: 227 QQEETYKKDGTAVVGADSKTGYLVSAAYTIDAVVLKAQYQDMEDKG-------------- 272

Query: 296 GMEQVENVDLQQYTLGADHRLSKNTLVYGHFTRFD 330
                       +++G D++L K T ++  +T  D
Sbjct: 273 ----------DSWSVGGDYKLGKPTKLFAFYTNRD 297