Pairwise Alignments

Query, 355 a.a., outer membrane porin, putative (RefSeq) from Shewanella amazonensis SB2B

Subject, 361 a.a., outer membrane protein (porin) from Dechlorosoma suillum PS

 Score = 68.9 bits (167), Expect = 2e-16
 Identities = 88/357 (24%), Positives = 139/357 (38%), Gaps = 50/357 (14%)

Query: 1   MKKSLIASAVATGAALSSFATLADGPAFYGRVDLAATNSNTGYATQNQKDGTVFENNF-- 58
           M+K  IA AVA  A+ ++FA        YG  D     + +          T F++    
Sbjct: 1   MQKKFIALAVAALASGAAFAQ--SNVQVYGVADFGLAVNGSALNGTTTGQNTRFDSGIAS 58

Query: 59  -SWLGVKGSEKLSQNVALIYQMEFGVNNFDNS---GDTFNTRNTFVGLQTQAGTALIGRN 114
            S LG KG+E L   +  ++  E G+   D +   G TF  R ++VGL    GT + GR 
Sbjct: 59  GSRLGFKGTEDLGNGLKALFNFEMGLTLDDGASAQGRTFG-RQSYVGLTGGFGTVIGGRI 117

Query: 115 DSVFKQSEGGFDLFG-NTNADIDLLVAGQS---------RLGDSITYYSPKIAHILTLNA 164
            +         D FG  T    + L A  S         R+ +++ Y SP  +  L++ A
Sbjct: 118 YTPHYTLMAQIDPFGVGTAGRANNLFASSSLAAGLYDPIRVNNTVAYVSPSFSG-LSVTA 176

Query: 165 TYVMEDNYEEGSWFNPGEDDEWSGNTYALSATLGDKALKAQ-NYYVAAAYNDGLDG---- 219
            Y       + S  N    +      +A++ T  +  L    NY+      + L G    
Sbjct: 177 AYGTNSLDNQESAANTSNQNR----LFAIAPTYTNGPLTVGLNYHQVKLDGNALIGGAGS 232

Query: 220 ---IKAYRGVAQVKFGELVLGALYQNSEHVADKYSNLEGDTWFINAGYKLG-NTTLKASY 275
              + +Y    +  FG L L   Y +++  A+     +   W I     +G    LKASY
Sbjct: 233 DGKLSSYTLAGKYDFGVLALSGAYGSNKVEANGNDADKVRNWLIGVSAPIGAKVVLKASY 292

Query: 276 GQDDSGLGKYVGRMVGDSDVGMEQVENVDLQQYTLGADHRLSKNTLVYGHFTRFDGD 332
                 L                  +N D +Q+ +GAD+ LSK T +Y  F++   D
Sbjct: 293 NNLKDKLN-----------------DNADAKQFAIGADYLLSKRTKLYTAFSKISND 332