Pairwise Alignments

Query, 942 a.a., excinuclease ABC, A subunit (RefSeq) from Shewanella amazonensis SB2B

Subject, 966 a.a., uvrABC system protein A from Phaeobacter inhibens DSM 17395

 Score = 1134 bits (2932), Expect = 0.0
 Identities = 579/958 (60%), Positives = 719/958 (75%), Gaps = 21/958 (2%)

Query: 1   MDKIEIRGARTHNLKNINLTIPRDKLIVITGLSGSGKSSLAFDTLYAEGQRRYVESLSAY 60
           +  IE+RGAR HNLKNI++ IPRD+L+VITGLSGSGKSSLAFDT+YAEGQRRYVESLSAY
Sbjct: 4   LKSIEVRGAREHNLKNIDVDIPRDQLVVITGLSGSGKSSLAFDTIYAEGQRRYVESLSAY 63

Query: 61  ARQFLSLMEKPDVDHIEGLSPAISIEQKSTSHNPRSTVGTITEVYDYLRLLFARVGEPRC 120
           ARQFL +MEKPDVDHI GLSPAISIEQK+TS NPRSTVGT+TE+YDYLRLLFAR G P  
Sbjct: 64  ARQFLDMMEKPDVDHISGLSPAISIEQKTTSKNPRSTVGTVTEIYDYLRLLFARAGTPYS 123

Query: 121 PTHGQPLAAQTVSQMVDKVLERPEGEKLMLLAPVVKARKGEHVKLLDSLSAQGYIRARID 180
           P  G P+ AQ V  MVD+++   EG +  LLAP+V+ RKGE+ K    L  QG+ R ++D
Sbjct: 124 PATGMPIEAQQVQDMVDRIMTLEEGTRGFLLAPIVRDRKGEYRKEFLELRKQGFQRVKVD 183

Query: 181 GEVCDLSDPPTLDLHVKHTIEVVVDRFKVKDDMQQRLAESFETTLELSGGIAVVASMEEG 240
           GE  +L +PPTLD   +H I+VVVDR  V++ ++ RLA+S  T L+L+ GIA++ +    
Sbjct: 184 GEFYELDEPPTLDKKFRHDIDVVVDRLVVREGVETRLADSLRTALDLADGIAILETAPRA 243

Query: 241 AA-------EEMIFSANFACPHCGYSMAELEPRIFSFNNPAGACQTCDGLGVQQFFDPER 293
           A        E + FS NFACP  G+++ E+EPR+FSFN P GAC  CDGLGV+ FFD   
Sbjct: 244 AEGEEAPEPERITFSENFACPVSGFTIPEIEPRLFSFNAPFGACPECDGLGVELFFDERL 303

Query: 294 VIVSGELSLAGGAVRGWDR-RNFYYFQMLKSLAEHYEFDVEAPFSELTAKVQKIVLYGSG 352
           V+    L +  GA+  W + ++ Y+ Q ++++A+HY+F+    + +L  KVQ++ L GSG
Sbjct: 304 VVPDQNLKIYDGALAPWRKGKSPYFLQTIEAIAKHYQFNKNTKWKDLPNKVQQVFLRGSG 363

Query: 353 KEEVAFRYVNDRGDVVVRKHPFEGILNNMDRRYRETESNTVREELAKYISNQACSSCGGS 412
            EE+ FRY ++ G V   +  FEG++ NM+RRYRET+SN +REE  +Y +N++C  C G 
Sbjct: 364 DEEIKFRY-DEGGRVYEVERVFEGVIPNMERRYRETDSNWIREEFERYQNNRSCGVCEGY 422

Query: 413 RLREEARHVFI--------EDLNLPTLTHWSIGEAMDYFNKL--EFEGQKAQIAEKILKE 462
           RLREEA  V I        + L++  +   SI EA+ +   +  +   QK +IA  I+KE
Sbjct: 423 RLREEALAVKIGPTGGRPDQLLHVGQVVQMSIREALAWIEDVPNQLSPQKQEIARAIVKE 482

Query: 463 VRDRLGFLVNVGLNYLSLARSAETLSGGEAQRIRLASQIGAGLVGVMYVLDEPSIGLHQR 522
           +R+RLGFL NVGL YL+L+R+A TLSGGE+QRIRLASQIG+GL GV+YVLDEPSIGLHQR
Sbjct: 483 IRERLGFLNNVGLEYLTLSRNAGTLSGGESQRIRLASQIGSGLTGVLYVLDEPSIGLHQR 542

Query: 523 DNERLLNTLTHLRDLGNTVIVVEHDEDAIRMADHIIDIGPGAGVHGGEVICDGDLAAITA 582
           DN+RLL TL +LRD GNTVIVVEHDEDAIR AD++ DIGPGAGVHGG+V+  G    + A
Sbjct: 543 DNDRLLETLKNLRDQGNTVIVVEHDEDAIREADYVFDIGPGAGVHGGQVVSHGTPEMVAA 602

Query: 583 CEHSVTGQYISGKRKIQVDGGRTPINPEQLIELRGARGNNLKNVDLSIPVGLFTCVTGVS 642
            E S+TGQY+SG R+I V   R   N +  +++  A GNNLKNV    P+G F CV+GVS
Sbjct: 603 DEGSITGQYLSGTREIAVPSVRRKGNGKS-VKVVKATGNNLKNVTAEFPLGKFLCVSGVS 661

Query: 643 GSGKSTLINDTFFKIAHKALNGATVDEPAPYTSITGLEQCDKVVDIDQSPIGRTPRSNPA 702
           G GKSTL  +T FK A   LNGA    PAP  +I GLE  DKV+DIDQ PIGRTPRSNPA
Sbjct: 662 GGGKSTLTIETLFKTASMRLNGAR-QTPAPCETIKGLEHLDKVIDIDQRPIGRTPRSNPA 720

Query: 703 TYTGIFTPIRELFAGTQESRTRGYQVGRFSFNVKGGRCEACQGDGLIKVEMHFLPDVYVP 762
           TYTG FTPIRE FAG  ES+TRGY+ GRFSFNVKGGRCEACQGDG+IK+EMHFLPDVYV 
Sbjct: 721 TYTGAFTPIREWFAGLPESKTRGYKPGRFSFNVKGGRCEACQGDGVIKIEMHFLPDVYVE 780

Query: 763 CDSCKGKRYNRETLEVKYKGKNIHEVLQMTVEDARTFFDAVPAIARKLQTLMDVGLSYIR 822
           C++CKG RYNRETLE+++KGK+I +VL MTVEDA+ FF AVP+I  K+  LM VGL YI+
Sbjct: 781 CETCKGARYNRETLEIQFKGKSIADVLDMTVEDAQQFFQAVPSIRDKMDALMRVGLGYIK 840

Query: 823 LGQSATTLSGGEAQRVKLAKELSKRDTGKTLYILDEPTTGLHFADIQLLLDVLHRLKSHG 882
           +GQ ATTLSGGEAQRVKL+KEL+KR TG+TLYILDEPTTGLHF D++ LL+VLH L   G
Sbjct: 841 VGQQATTLSGGEAQRVKLSKELAKRSTGRTLYILDEPTTGLHFEDVRKLLEVLHELVEQG 900

Query: 883 NTIVVIEHNLDVIKTADWIVDLGPEGGSGGGTILVAGTPEDVAEHPTSHTARFLKPLL 940
           N++VVIEHNLDVIKTADWI+D+GPEGG GGG I+ AGTPEDVA    SHT  +LK +L
Sbjct: 901 NSVVVIEHNLDVIKTADWIIDIGPEGGDGGGEIVAAGTPEDVAAAKGSHTGHYLKEIL 958