Pairwise Alignments

Query, 942 a.a., excinuclease ABC, A subunit (RefSeq) from Shewanella amazonensis SB2B

Subject, 977 a.a., excinuclease ABC subunit UvrA from Bifidobacterium breve UCC2003

 Score = 1034 bits (2674), Expect = 0.0
 Identities = 537/947 (56%), Positives = 679/947 (71%), Gaps = 13/947 (1%)

Query: 3   KIEIRGARTHNLKNINLTIPRDKLIVITGLSGSGKSSLAFDTLYAEGQRRYVESLSAYAR 62
           KI I+GAR HNLK+++L IPR++++V TGLSGSGKSSLAFDTL+AEGQRRYVESLSAYAR
Sbjct: 35  KITIQGAREHNLKDVDLAIPRNRMVVFTGLSGSGKSSLAFDTLFAEGQRRYVESLSAYAR 94

Query: 63  QFLSLMEKPDVDHIEGLSPAISIEQKSTSHNPRSTVGTITEVYDYLRLLFARVGEPRCPT 122
           QFL  M+KPDVD IEGLSPA+SI+QK+T+ NPRSTVGTITE+YDYLRLLFAR G P CP 
Sbjct: 95  QFLGQMDKPDVDFIEGLSPAVSIDQKTTNRNPRSTVGTITEIYDYLRLLFARTGIPHCPE 154

Query: 123 HGQPLAAQTVSQMVDKVLERPEGEKLMLLAPVVKARKGEHVKLLDSLSAQGYIRARIDGE 182
            G+P+A+QT  Q+VD +L+ PE  +  +LAPVVK RKGE V +L+ L + GY RA IDGE
Sbjct: 155 CGEPVASQTPQQIVDTLLDYPERTRFQILAPVVKGRKGEFVDMLELLRSDGYARALIDGE 214

Query: 183 VCDLSDPPTLDLHVKHTIEVVVDRFKVKDDMQQRLAESFETTLELSGGIAVV--ASMEEG 240
           +  LSD   L    KHTIEVVVDR  VKD ++QRL +S ET L+L+ G  V+     EEG
Sbjct: 215 MKQLSDDIKLTKQKKHTIEVVVDRLVVKDGIRQRLTDSVETALKLANGSIVIDFVDEEEG 274

Query: 241 A-AEEMIFSANFACPHCGY--SMAELEPRIFSFNNPAGACQTCDGLGVQQFFDPERVIVS 297
           + A    FS + +CP+ G+   + E+EPR FSFN P GAC  C GLG +   DPE VI  
Sbjct: 275 SPARRRPFSEHRSCPN-GHVLELDEVEPRTFSFNAPYGACPACTGLGFKLEIDPELVISD 333

Query: 298 GELSLAGGAVRGWDRRNF---YYFQMLKSLAEHYEFDVEAPFSELTAKVQKIVLYGSG-K 353
            + SLA G +  W        YY  +L+ LA+   F ++ P+  L   V+  +LYG   K
Sbjct: 334 PDKSLADGVIEPWSGTKMTSQYYGHILEGLAKEMGFSMKTPWKNLPTDVKHDILYGHDFK 393

Query: 354 EEVAFRYVNDRGDVVVRKHPFEGILNNMDRRYRETESNTVREELAKYISNQACSSCGGSR 413
             V++R  N  G +      FEG++  + RR+ ET+S ++RE    Y+    C  C G R
Sbjct: 394 VNVSYR--NRWGRLREYSTGFEGVVRTLMRRHDETDSQSMREYYESYMREVPCQVCQGRR 451

Query: 414 LREEARHVFIEDLNLPTLTHWSIGEAMDYFNKLEFEGQKAQIAEKILKEVRDRLGFLVNV 473
           L+ E   V ++  ++  +    +   + + N L+ EG    IA ++LKE++ RLGFL +V
Sbjct: 452 LKPEVLAVTVDGKSIFDVCDMPVVRELAWVNGLKLEGSAQMIAGEVLKEIKARLGFLNDV 511

Query: 474 GLNYLSLARSAETLSGGEAQRIRLASQIGAGLVGVMYVLDEPSIGLHQRDNERLLNTLTH 533
           GL+YL+L+R+A TLSGGEAQRIRLA+QIG+GLVGVMYVLDEPSIGLHQRDNERL+ TL H
Sbjct: 512 GLDYLTLSRAAATLSGGEAQRIRLATQIGSGLVGVMYVLDEPSIGLHQRDNERLIETLHH 571

Query: 534 LRDLGNTVIVVEHDEDAIRMADHIIDIGPGAGVHGGEVICDGDLAAITACEHSVTGQYIS 593
           LRDLGNT+IVVEHDED IR AD ++DIGPGAG HGGEVI  G    +   + S+TG YI+
Sbjct: 572 LRDLGNTLIVVEHDEDTIRQADWLVDIGPGAGEHGGEVIYSGPAKHLIEAKRSITGDYIA 631

Query: 594 GKRKIQVDGGRTPINPEQLIELRGARGNNLKNVDLSIPVGLFTCVTGVSGSGKSTLINDT 653
            +R+I V   R  +   Q++++ GAR NNLKN+D+S P+G+ T VTGVSGSGKS+L+N  
Sbjct: 632 HRREIAVPAKRRKVRKTQMLKVVGARENNLKNIDVSFPLGVLTVVTGVSGSGKSSLVNSI 691

Query: 654 FFKIAHKALNGATVDEPAPYTSITGLEQCDKVVDIDQSPIGRTPRSNPATYTGIFTPIRE 713
            + +    LNGA +  P  +T + G++Q  KV+ +DQ+PIGRTPRSNPATYTG++  IR 
Sbjct: 692 LYPVLADKLNGARI-VPGKHTRVEGVDQVRKVIHVDQNPIGRTPRSNPATYTGVWDKIRA 750

Query: 714 LFAGTQESRTRGYQVGRFSFNVKGGRCEACQGDGLIKVEMHFLPDVYVPCDSCKGKRYNR 773
           LFA T E++ RGY  GRFSFNVKGGRCEAC GDG +K+EM+FLPDVYV C++C GKRYNR
Sbjct: 751 LFAKTPEAQVRGYGPGRFSFNVKGGRCEACHGDGTLKIEMNFLPDVYVECETCHGKRYNR 810

Query: 774 ETLEVKYKGKNIHEVLQMTVEDARTFFDAVPAIARKLQTLMDVGLSYIRLGQSATTLSGG 833
           ETLEV Y GK + ++L M +E+A  FF A   I+R L+TL+DVGL YIRLGQ A TLSGG
Sbjct: 811 ETLEVTYNGKTVSDILDMPIEEAANFFKAYTGISRYLKTLVDVGLGYIRLGQPAPTLSGG 870

Query: 834 EAQRVKLAKELSKRDTGKTLYILDEPTTGLHFADIQLLLDVLHRLKSHGNTIVVIEHNLD 893
           E+QRVKLA EL +R  GKT+YILDEPTTGLHF D+  LL VL  L   GNT++VIEHNLD
Sbjct: 871 ESQRVKLATELQRRSDGKTVYILDEPTTGLHFEDVNKLLKVLQSLVDKGNTVIVIEHNLD 930

Query: 894 VIKTADWIVDLGPEGGSGGGTILVAGTPEDVAEHPTSHTARFLKPLL 940
           VIK ADW++DLGPEGG GGGTI+  GTPE VAE   S T +FLKP+L
Sbjct: 931 VIKEADWLIDLGPEGGDGGGTIVTQGTPEQVAECDESWTGKFLKPML 977