Pairwise Alignments

Query, 502 a.a., ribonuclease G (RefSeq) from Shewanella amazonensis SB2B

Subject, 924 a.a., ribonuclease E protein from Sinorhizobium meliloti 1021

 Score =  221 bits (562), Expect = 1e-61
 Identities = 130/386 (33%), Positives = 207/386 (53%), Gaps = 3/386 (0%)

Query: 107 IAELVRQGQDIMVQVVKDPLGTKGARLTTDITLPSRYLVFMPGSAHVG-VSQRIESEDER 165
           I E++++ Q ++VQV K+  G KGA LTT ++L  RY V MP +A  G +S++I +  +R
Sbjct: 243 IQEVIKRRQILLVQVAKEERGNKGAALTTYLSLAGRYSVLMPNTARGGGISRKITNLQDR 302

Query: 166 TRLKEATLPF-VDEDGGFIIRTAAEGAGAEELAQDAAFLRRVWAKVAERRKRKGSS-LLY 223
            RLKE      V +  G I+RTA       E+ +D  +L R+W  V        +  L+Y
Sbjct: 303 KRLKEIARGLDVPQGMGVILRTAGANRTKVEIKRDFEYLMRLWENVRTLTLNSTAPCLVY 362

Query: 224 QDLALPVRIVRDFVGTDLDRIQVDSRSTFEELKHFAQEFMPEFEEKIELYSGSVPIFDLY 283
           ++ +L  R +RD    D+  I V     ++E K F +  MP   + ++ Y    PIF   
Sbjct: 363 EEGSLIKRSIRDLYNKDISEIVVSGEEGYKEAKGFMKMLMPSHAKVVQPYRDVHPIFSRS 422

Query: 284 DVENEIQRALGRKVELKSGGYLIIDQTEAMTTVDINTGAFVGHRNLEETIFNTNLEATQA 343
            +E ++ R L  +V LKSGGY+II+QTEA+ ++D+N+G      ++E+T   TNLEA + 
Sbjct: 423 GIEAQLDRMLQPQVTLKSGGYIIINQTEALVSIDVNSGRSTREHSIEDTALQTNLEAAEE 482

Query: 344 IARQLRLRNLGGIIIIDFIDMLSEDHRQRVLSSLTSALAHDRVKTNVSGFSGLGLVEMTR 403
           +ARQLRLR+L G+I+IDFIDM  + + + V   L   L +DR +  V   S  GL+EM+R
Sbjct: 483 VARQLRLRDLAGLIVIDFIDMEEKRNNRSVEKKLKDCLKNDRARIQVGRISHFGLLEMSR 542

Query: 404 KRTRESLEHVLCGECPACKGSGYMKTVETVTYEIFREIIRLDKAYDADEFLVYCAPAVHA 463
           +R R S+       CP C G+G++++  +V   + R I          +  V   P +  
Sbjct: 543 QRIRASVLESTMQTCPHCNGTGHIRSQSSVALHVLRGIEEHLLKNTTHDISVRTTPDIAL 602

Query: 464 CLSGDEHHHVAELEVYIGKRIRVQME 489
            L   +   + + E   G  I ++ +
Sbjct: 603 YLLNQKRSSITDYEQRFGVSIFIEAD 628



 Score = 51.6 bits (122), Expect = 1e-10
 Identities = 28/76 (36%), Positives = 46/76 (60%), Gaps = 1/76 (1%)

Query: 15 IGSELLINVTPNE-ARVALVEHGVLQEVHIERRMKRGLVGNIYKGKISRVLPGMQAAFVD 73
          +  ++LI+ + +E  RV +V    ++E   E   K+ + GNIY  K++RV P +QAAFVD
Sbjct: 1  MAEKMLIDASHSEETRVVVVRGNRIEEFDFESEHKKQIRGNIYLAKVTRVEPSLQAAFVD 60

Query: 74 IGLDKAAFLHASDIMP 89
           G ++  FL  ++I P
Sbjct: 61 YGGNRHGFLAFAEIHP 76