Pairwise Alignments

Query, 502 a.a., ribonuclease G (RefSeq) from Shewanella amazonensis SB2B

Subject, 978 a.a., ribonuclease E from Phaeobacter inhibens DSM 17395

 Score =  234 bits (598), Expect = 8e-66
 Identities = 140/433 (32%), Positives = 228/433 (52%), Gaps = 12/433 (2%)

Query: 70  AFVDIGLDKAAFLHASDIMPHTECVADVEKGNFV--VRD-------IAELVRQGQDIMVQ 120
           A  D   DK A   A+    + E VAD +    +  VR        I E+++  Q ++VQ
Sbjct: 233 ADADDSADKDAAADATAKDENIESVADEDDSEDIRPVRKPRPRRYKIQEVIKVRQVLLVQ 292

Query: 121 VVKDPLGTKGARLTTDITLPSRYLVFMPGSAHVG-VSQRIESEDERTRLKEATLPF-VDE 178
           VVK+  G KGA LTT ++L  RY V MP +A  G +S++I +  +R +LK+  +   V  
Sbjct: 293 VVKEERGNKGAALTTYLSLAGRYCVLMPNTARGGGISRKITNAADRKKLKDIAVELDVPT 352

Query: 179 DGGFIIRTAAEGAGAEELAQDAAFLRRVWAKVAERR-KRKGSSLLYQDLALPVRIVRDFV 237
             G I+RTA       E+ +D  +L+R+W ++ E   K    + +Y++  L  R +RD  
Sbjct: 353 GAGLIVRTAGAKRTKSEIKRDYEYLQRLWEQIRELTLKSIAPAKIYEEGDLIKRSIRDLY 412

Query: 238 GTDLDRIQVDSRSTFEELKHFAQEFMPEFEEKIELYSGSVPIFDLYDVENEIQRALGRKV 297
             ++D + V+    +   K F +  MP   + ++ Y   +P+F  + VE+ +       V
Sbjct: 413 SREIDEVLVEGERGYRIAKDFMKMIMPSHAKNVKNYQDQLPLFARFQVESYLGAMFNPTV 472

Query: 298 ELKSGGYLIIDQTEAMTTVDINTGAFVGHRNLEETIFNTNLEATQAIARQLRLRNLGGII 357
           +LKSGGY++I  TEA+  +D+N+G      ++EET   TNLEA + +ARQLRLR+L G+I
Sbjct: 473 QLKSGGYIVIGVTEALVAIDVNSGRATKEGSIEETALKTNLEAAEEVARQLRLRDLAGLI 532

Query: 358 IIDFIDMLSEDHRQRVLSSLTSALAHDRVKTNVSGFSGLGLVEMTRKRTRESLEHVLCGE 417
           +IDFIDM    +   V   +   L  DR +  V   SG GL+EM+R+R R  +       
Sbjct: 533 VIDFIDMDERKNNAAVEKRMKDKLKTDRARIQVGRISGFGLMEMSRQRLRPGMIEATTAP 592

Query: 418 CPACKGSGYMKTVETVTYEIFREIIRLDKAYDADEFLVYCAPAVHACLSGDEHHHVAELE 477
           CP C G+G +++ +++   I R+I        + E LV C  ++   L   +  H+A++E
Sbjct: 593 CPHCHGTGLIRSDDSLALSILRQIEEEGTRRRSREVLVRCPVSIANYLMNQKREHIAQIE 652

Query: 478 VYIGKRIRVQMEP 490
              G  +R++ +P
Sbjct: 653 TRYGLSVRIEGDP 665



 Score = 58.2 bits (139), Expect = 1e-12
 Identities = 32/76 (42%), Positives = 46/76 (60%), Gaps = 1/76 (1%)

Query: 15 IGSELLINVT-PNEARVALVEHGVLQEVHIERRMKRGLVGNIYKGKISRVLPGMQAAFVD 73
          +  ++LI+ T   E RV +V+   ++E   E   KR L GNIY  K++RV P +QAAFVD
Sbjct: 1  MAKKMLIDATHAEETRVVVVDGNKVEEFDFESENKRQLAGNIYLAKVTRVEPSLQAAFVD 60

Query: 74 IGLDKAAFLHASDIMP 89
           G ++  FL  S+I P
Sbjct: 61 YGGNRHGFLAFSEIHP 76