Pairwise Alignments

Query, 441 a.a., ATP-dependent protease ATP-binding subunit HslU (RefSeq) from Shewanella amazonensis SB2B

Subject, 414 a.a., ATP-dependent Clp protease ATP-binding subunit (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score =  104 bits (259), Expect = 6e-27
 Identities = 76/233 (32%), Positives = 109/233 (46%), Gaps = 56/233 (24%)

Query: 247 QHGIVFIDEIDKICKRGETSG--PDVSREGVQRDLLPLVEGCTVNT------KHG----- 293
           + GIVFIDEIDKI ++G+      DVS EGVQ+ LL L+EG  VN       KH      
Sbjct: 177 EQGIVFIDEIDKIARKGDNPSITRDVSGEGVQQGLLKLLEGSVVNVPPQGGRKHPDQKMI 236

Query: 294 MVKTDHILFIASGAF---------------------------------QMSKPSDL---- 316
            V T +ILFI  GAF                                 Q   P DL    
Sbjct: 237 PVNTKNILFICGGAFDGIEKKIAQRLNTHVVGYTASQKTAVIDKNNMMQYIAPQDLKSFG 296

Query: 317 -IPELQGRLPIRVELDALTASDFKRILTEPHASLTEQYVALMATEGVTIEFTETGIDRIA 375
            IPE+ GRLP+   L+ L  +  + ILTEP  S+ +QY+ L   +G+ + F ++  + I 
Sbjct: 297 LIPEIIGRLPVLTYLNPLDRNALRAILTEPKNSIIKQYIKLFEMDGIKLTFEDSVFEYIV 356

Query: 376 QAAWQVNERTENIGARRLHTVMERLMEDISFEASDKSGSKFTIDADYVNAHLD 428
             A +       +GAR L +++E +M D+ FE   +S  ++ +  DY    L+
Sbjct: 357 DKAVEY-----KLGARGLRSIVETIMMDVMFEIPSESKKEYKVTLDYAKQQLE 404



 Score = 87.4 bits (215), Expect = 8e-22
 Identities = 46/103 (44%), Positives = 67/103 (65%), Gaps = 1/103 (0%)

Query: 6   PREIVHELDAHIIGQQKAKRSVAVALRNRWRRM-QLDAALRHEVTPKNILMIGPTGVGKT 64
           P EI   LD ++IGQ  AKR ++V++ N ++R+ Q D+    E+   NI+M+G TG GKT
Sbjct: 67  PVEIKKFLDQYVIGQDDAKRFLSVSVYNHYKRLLQKDSGDDVEIEKSNIIMVGSTGTGKT 126

Query: 65  EIARRLAKLANAPFIKVEATKFTEVGYVGKEVEQIIRDLTDTA 107
            +AR +AKL + PF  V+AT  TE GYVG+++E I+  L   A
Sbjct: 127 LLARTIAKLLHVPFTIVDATVLTEAGYVGEDIESILTRLLQVA 169