Pairwise Alignments

Query, 419 a.a., type IV pilus biogenesis protein PilC (RefSeq) from Shewanella amazonensis SB2B

Subject, 422 a.a., type II secretion system protein (RefSeq) from Shewanella loihica PV-4

 Score =  655 bits (1691), Expect = 0.0
 Identities = 337/422 (79%), Positives = 375/422 (88%), Gaps = 4/422 (0%)

Query: 1   MATAVANKSKKQTQKLA---PKVYNFEWKGLNRDGKKSSGELRGASVAEIKTLLKNQGIN 57
           MATA   K+  + QK A   PKV  FEWKG NRDGKK+SGELRG S AEIK  LK+QG+N
Sbjct: 1   MATASLAKTSTKKQKAAKAQPKVVTFEWKGTNRDGKKTSGELRGTSPAEIKAQLKSQGVN 60

Query: 58  PKVVRKKSDGLFGASNKKINAMDIAMVTRQIATMLMAGVPLVTTIEILGKGHEKPKMREL 117
           PKVV+KK++ LF  S+ KI AMDIAM+TRQIATML AGVP+VTT+E+LG+GHEKP+MREL
Sbjct: 61  PKVVKKKAEPLF-KSDPKIKAMDIAMITRQIATMLAAGVPIVTTLEMLGRGHEKPRMREL 119

Query: 118 LGTILNDIQAGIPLSDALRPHRIYFDDLYVDLVAAGEHSGSLDTVFDRIATYREKAEALK 177
           LGTI+ D+Q+GIPLSD+L+PHR YFDDLYVDLV AGEHSGSLD VFDRIATYREKAEALK
Sbjct: 120 LGTIVADVQSGIPLSDSLKPHRQYFDDLYVDLVGAGEHSGSLDAVFDRIATYREKAEALK 179

Query: 178 SKIKKAMFYPAAVVVVAIAVTTLLLLFVVPQFEEIFTSFGAELPAFTQLIINISRFLQSS 237
           SKIKKAMFYPAAV+VVAIAVTTLLLLFVVPQFE+IF  FGAELPAFTQ+I++ISR+LQSS
Sbjct: 180 SKIKKAMFYPAAVIVVAIAVTTLLLLFVVPQFEDIFAGFGAELPAFTQMIVSISRWLQSS 239

Query: 238 WYFFLTAIVGSIWLYVRAHRNSQAVRDRQDEFVLKIPVIGEILHKAAMARFARTLATTFA 297
           WYFF+  IV SIW + +AH  S   R++ DE VLKIP+IGEILHKAAMARFARTLATTFA
Sbjct: 240 WYFFVIGIVVSIWSFKKAHLKSAGFRNKVDELVLKIPIIGEILHKAAMARFARTLATTFA 299

Query: 298 AGVPLIDGLESAAGASGNAVYRKALLRIRTEVMAGMQMNVAMRTVNLFPDMLIQMVMIGE 357
           AGVPLIDGLESAAGASGN VYR AL ++RTEVM+GMQMNVAMRT  LFPDMLIQMVMIGE
Sbjct: 300 AGVPLIDGLESAAGASGNYVYRSALTKVRTEVMSGMQMNVAMRTTGLFPDMLIQMVMIGE 359

Query: 358 ESGSLDNMLNKIANIYEMQVDDAVDGLSSLIEPIMMVVIGTLVGGLIVGMYLPIFQMGNV 417
           ESG LD+MLNKIANIYEMQVDDAVDGLSSLIEP+MMVVIGTLVGGLI+GMYLPIFQMGNV
Sbjct: 360 ESGGLDDMLNKIANIYEMQVDDAVDGLSSLIEPMMMVVIGTLVGGLIIGMYLPIFQMGNV 419

Query: 418 VG 419
           VG
Sbjct: 420 VG 421