Pairwise Alignments

Query, 607 a.a., ATP-dependent DNA helicase RecQ (RefSeq) from Shewanella amazonensis SB2B

Subject, 699 a.a., ATP-dependent DNA helicase RecQ from Phaeobacter inhibens DSM 17395

 Score =  491 bits (1264), Expect = e-143
 Identities = 266/587 (45%), Positives = 364/587 (62%), Gaps = 7/587 (1%)

Query: 17  LQQVFGYRDFRPGQREVMTRVCQGEDCLVIMPTGGGKSLCYQVPALVLPGVTLVVSPLIS 76
           L+++FG+  FRPGQ E++  V  GE+ L IMPTGGGKSLC+Q+PAL+  GVT+V+SPLI+
Sbjct: 28  LREIFGFDGFRPGQEEIVDAVTAGENVLAIMPTGGGKSLCFQLPALLREGVTVVISPLIA 87

Query: 77  LMKDQVDSLIQSGVAAAYLNSSQPREQAIEVLRQLRFGELKLLYVSPERLLQGDFLSRLD 136
           LM+DQV +L + GV A  L S    E+   + + +  G LKLLY++PERL  G  +  L 
Sbjct: 88  LMRDQVRALQEVGVTAGALTSGNTDEETEALWQSIEEGRLKLLYMAPERLASGAAMGMLR 147

Query: 137 ELHISLFAVDEAHCISEWGHDFRPEYAALGQLKQRFPHVPVMALTATADEATRSSICERL 196
            + +SL AVDEAHC+S+WGHDFRP+Y  +G+L+ R   VP+ A TATAD+ TR  I E+L
Sbjct: 148 RIGVSLIAVDEAHCVSQWGHDFRPDYLRIGELR-RALDVPLAAFTATADQETREEIVEKL 206

Query: 197 --GIQPFQHLASFDRPNIRYTVAEKLNAANQLRQFIQSQKGANGIVYCSSRRRVDEVAER 254
             G  P   L  FDRPNI    A K +   Q+ +F  ++KG +GIVYC +R + + ++  
Sbjct: 207 FDGEAPRSFLRGFDRPNIHLAFATKDSPRRQILEFAAARKGQSGIVYCGTRAKTEALSAG 266

Query: 255 LRQQGFYAEGYHAGMTQDERASVQDRFLKDQIDVVVATVAFGMGINKSNVRFVVHYDIPK 314
           LR+ G  A  YH GM  ++R  V+ RF ++   +VVATVAFGMGI+K ++R+V H D+PK
Sbjct: 267 LREAGHAACYYHGGMDAEDRRGVETRFAREDGLIVVATVAFGMGIDKPDIRWVAHADLPK 326

Query: 315 SIESYYQETGRAGRDGLDAEALLLFDPADIGRVRHLIEQ-QEPGPQQQVEFHKLYSMAAF 373
           SIE+YYQE GR GRDG  AE L LF P DI   R  I++   P  ++  +  +L ++   
Sbjct: 327 SIEAYYQEIGRGGRDGAPAETLTLFGPEDIRLRRSQIDEGLAPAERRGADHARLNALLGL 386

Query: 374 AEAQTCRRQVLLHYFGEAANEPCGNCDICIDPPKRYNGTEDAQKVLSCIYRLNQRFGVNH 433
           AEA  CRRQ LL YFGE A EPCGNCD+C  P   ++GT   +K LS I R N+ +G  H
Sbjct: 387 AEALKCRRQTLLAYFGETA-EPCGNCDLCDQPVDVFDGTTAVRKALSAILRTNETYGSGH 445

Query: 434 LIEVLRGSKAASVVDRGHDKLSTWGIGKEKSTEYWLSVTRQLIHLGLASQDITRGSSVRL 493
           LI++L G+    V D+ HD LS +  GKE     W +V RQ++   L   D  R  ++R+
Sbjct: 446 LIDILVGNTTDRVRDKRHDDLSVFACGKEYGKRQWQAVFRQMMGHDLVRPDPERHGALRM 505

Query: 494 NSAARPVLKGEVALMLAEPRLSLSDVPRKRTSSRTPQNYDRKLFARLKNLRRTIAEEQDV 553
             AA PVL+GE  + L   R ++S   R         + D  L + LK  RR +AE Q V
Sbjct: 506 TEAALPVLRGEQDIALR--RDTISSAKRSPAVKALVSDEDAPLLSALKAKRRALAEAQKV 563

Query: 554 PPYLVFNDATLAEMAWMLPKSEAELLAVNGVGERKLARFGGEFLDEI 600
           P Y++F D TL EMA   P S  ++  + GVG +KL R+G +FL  I
Sbjct: 564 PAYVIFPDRTLIEMAETRPSSLDQMARIGGVGAKKLERYGRDFLSVI 610



 Score = 27.7 bits (60), Expect = 0.002
 Identities = 15/37 (40%), Positives = 22/37 (59%), Gaps = 2/37 (5%)

Query: 562 ATLAEMAWMLPKSEAELLAVNGVGERKLARFGGEFLD 598
           A LA++A M P+ E  +  +  +GER+  RF   FLD
Sbjct: 659 AQLAKLAQMRPQDEMVITRL--LGERRAERFAAAFLD 693