Pairwise Alignments

Query, 607 a.a., ATP-dependent DNA helicase RecQ (RefSeq) from Shewanella amazonensis SB2B

Subject, 618 a.a., ATP-dependent DNA helicase RecQ from Herbaspirillum seropedicae SmR1

 Score =  537 bits (1383), Expect = e-157
 Identities = 291/607 (47%), Positives = 397/607 (65%), Gaps = 13/607 (2%)

Query: 4   PASEHTQDPLSHCLQQVFGYRDFRPGQREVMTRVCQGEDCLVIMPTGGGKSLCYQVPALV 63
           PA    Q+   H L+ VFGY  FR  Q E++  V  G D LV+MPTGGGKSLCYQVPAL+
Sbjct: 8   PADAPPQERALHVLETVFGYSSFRGHQGEIVQHVAGGGDALVLMPTGGGKSLCYQVPALL 67

Query: 64  LPGVTLVVSPLISLMKDQVDSLIQSGVAAAYLNSSQPREQAIEVLRQLRFGELKLLYVSP 123
             G  +V+SPLI+LM+DQVD+L + GV AA+LNS+Q  ++A+++ R+LR G+L LLYV+P
Sbjct: 68  RQGTGVVISPLIALMQDQVDALDEVGVRAAFLNSTQSFDEAMQIERRLRQGDLDLLYVAP 127

Query: 124 ERLLQGDFLSRLDELHISLFAVDEAHCISEWGHDFRPEYAALGQLKQRFPHVPVMALTAT 183
           ERL+    L  L+   ISLFA+DEAHC+S+WGHDFRPEY  L  L +RFP VP +ALTAT
Sbjct: 128 ERLMTPRCLDLLESARISLFAIDEAHCVSQWGHDFRPEYIKLSVLHERFPQVPRIALTAT 187

Query: 184 ADEATRSSICERLGIQPF-QHLASFDRPNIRYTVAEKLNAANQLRQFIQSQKGAN-GIVY 241
           AD+ TR  I  RL ++   Q ++SFDRPNIRY + EK N   QL  FI+S+   + GIVY
Sbjct: 188 ADQQTREEIIHRLQLEDARQFVSSFDRPNIRYQIVEKANGRKQLLDFIKSEHPEDAGIVY 247

Query: 242 CSSRRRVDEVAERLRQQGFYAEGYHAGMTQDERASVQDRFLKDQIDVVVATVAFGMGINK 301
           C SR++V+E A+ LR +G  A  YHAGM   +R + Q RFL++   V+VAT+AFGMGI+K
Sbjct: 248 CLSRKKVEETADFLRSEGINALAYHAGMDYAQRTANQARFLREDKIVMVATIAFGMGIDK 307

Query: 302 SNVRFVVHYDIPKSIESYYQETGRAGRDGLDAEALLLFDPADIGRVRHLIEQQEPGPQ-Q 360
            +VRFV H D+PKS+E YYQETGRAGRDGL A+A + +   D+ + R +I++ +     +
Sbjct: 308 PDVRFVCHLDLPKSVEGYYQETGRAGRDGLPADAWMAYGLQDVVQQRRMIDESDADETFK 367

Query: 361 QVEFHKLYSMAAFAEAQTCRRQVLLHYFGEAANEPCGNCDICIDPPKRYNGTEDAQKVLS 420
           +V   KL +M A  E   CRR  LL YFGE  + PCGNCD C+ PP  ++ T + QK+LS
Sbjct: 368 RVLGTKLNAMLALCETLHCRRVHLLDYFGE-KSAPCGNCDTCLTPPVSFDATVEVQKLLS 426

Query: 421 CIYRLNQRFGVNHLIEVLRGSKAASVVDRGHDKLSTWGIGKEKSTEYWLSVTRQLIHLGL 480
            +YR+ QRF   H+IEVLRG     V    HD+LS +G+G ++    W ++ RQ+I LGL
Sbjct: 427 TVYRVEQRFAPGHVIEVLRGIDGERVKQWRHDQLSVFGVGSDRGEAEWRAILRQVIALGL 486

Query: 481 ASQDITRGSSVRLNSAARPVLKGEVALMLAEPRLSLSDVPRKRTSSRTP------QNYDR 534
            + D    S+++L  AARPVL+GE A+ L   R        KR+S R+          ++
Sbjct: 487 LTVDADNYSALKLTEAARPVLRGEQAVQL---RRYQKPEKAKRSSQRSSFVETDLSTEEQ 543

Query: 535 KLFARLKNLRRTIAEEQDVPPYLVFNDATLAEMAWMLPKSEAELLAVNGVGERKLARFGG 594
            LF +L+  R   A   +VP Y++F+DAT+ E+A   P+S  +L  V GVGE+KL  +G 
Sbjct: 544 ALFEKLRWWRVETARAHNVPAYVIFHDATMREIAKARPQSLDDLRHVTGVGEKKLETYGA 603

Query: 595 EFLDEIA 601
           + +  IA
Sbjct: 604 QIIALIA 610