Pairwise Alignments

Query, 607 a.a., ATP-dependent DNA helicase RecQ (RefSeq) from Shewanella amazonensis SB2B

Subject, 620 a.a., ATP-dependent DNA helicase recQ (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score =  478 bits (1229), Expect = e-139
 Identities = 255/614 (41%), Positives = 376/614 (61%), Gaps = 19/614 (3%)

Query: 5   ASEHTQDPLSHCLQQVFGYRDFRPGQREVMTRVCQGEDCLVIMPTGGGKSLCYQVPALVL 64
           A++  Q  +   L+  FGY  FRP Q E++  +   +D LV+MPTGGGKS+CYQ+PAL+ 
Sbjct: 12  ATKFKQMLMKETLKSYFGYDSFRPLQEEIIRHLLNKQDSLVLMPTGGGKSICYQLPALLS 71

Query: 65  PGVTLVVSPLISLMKDQVDSLIQSGVAAAYLNSSQPREQAIEVLRQLRFGELKLLYVSPE 124
            G  +VVSPLISLMKDQV++L  +G+AA  LNSS    +   + R    G LKLLY+SPE
Sbjct: 72  EGTAVVVSPLISLMKDQVETLQANGIAAGALNSSNDETENANLRRACIEGRLKLLYISPE 131

Query: 125 RLL-QGDFLSRLDELHISLFAVDEAHCISEWGHDFRPEYAALGQLKQRFPHVPVMALTAT 183
           +L+ + D+L R  ++ ISLFA+DEAHCIS+WGHDFRPEY  +G L Q+FP VP++ALTAT
Sbjct: 132 KLIAEKDYLLR--DMSISLFAIDEAHCISQWGHDFRPEYTQMGMLHQQFPQVPIIALTAT 189

Query: 184 ADEATRSSICERLG-IQPFQHLASFDRPNIRYTVAEKLNAANQ---LRQFIQSQKGANGI 239
           AD+ TR  I  +L  IQP   ++SFDRPNI   V     A  +   + +FI   +  +GI
Sbjct: 190 ADKITREDIIRQLHLIQPRTFISSFDRPNISLDVKRGFQAKEKNKAILEFIHRHREESGI 249

Query: 240 VYCSSRRRVDEVAERLRQQGFYAEGYHAGMTQDERASVQDRFLKDQIDVVVATVAFGMGI 299
           +YC SR + + VA+ L++QG     YHAG++   R   Q+ F+ D+I VV AT+AFGMGI
Sbjct: 250 IYCMSRNKTETVAQMLQKQGIRCGVYHAGLSPQHRDETQNDFINDRIQVVCATIAFGMGI 309

Query: 300 NKSNVRFVVHYDIPKSIESYYQETGRAGRDGLDAEALLLFDPADIGRVRHLIEQQEPGPQ 359
           +KSNVR+V+HY++PKSIES+YQE GRAGRDGL ++ +L +   D+  +     +     Q
Sbjct: 310 DKSNVRWVIHYNLPKSIESFYQEIGRAGRDGLPSDTVLFYSLGDLILLTKFATESN---Q 366

Query: 360 QQVEFHKLYSMAAFAEAQTCRRQVLLHYFGEAANEPCGNCDICIDPPKRYNGTEDAQKVL 419
           Q +   KL  M  +AEA  CRR++LL YFGE + E CGNCD+C +PP+R++GT   QK L
Sbjct: 367 QTINLEKLQRMQQYAEADICRRRILLSYFGETSTEDCGNCDVCKNPPQRFDGTVIVQKAL 426

Query: 420 SCIYRLNQRFGVNHLIEVLRGSKAASVVDRGHDKLSTWGIGKEKSTEYWLSVTRQLIHLG 479
           S I R  Q+     LI++LRGS +A V  +G+ +L T+G G++     W     Q++ LG
Sbjct: 427 SAIARAEQQISTGILIDILRGSYSAEVTAKGYQELKTFGAGRDIPPRDWQDYLLQMLQLG 486

Query: 480 LASQDITRGSSVRLNSAARPVLKGEVALMLA----EPRLSLSDVPRKRTSSR-----TPQ 530
                    + +++  +   +L G+   MLA    E  ++     +K   ++      P 
Sbjct: 487 YFEIAYNENNHLKITPSGSNILFGKAKAMLAVIHREEIVTGKGKKKKVVIAKELPFGIPG 546

Query: 531 NYDRKLFARLKNLRRTIAEEQDVPPYLVFNDATLAEMAWMLPKSEAELLAVNGVGERKLA 590
             +  LF  L+ LR+ IA++  +P Y++ +D  L  ++   P +      ++G+GE K  
Sbjct: 547 GENEDLFEALRGLRKQIADQDGLPAYIILSDKVLHLLSISRPTTIEAFGEISGIGEFKKK 606

Query: 591 RFGGEFLDEIAAYI 604
           ++G EF++ I  ++
Sbjct: 607 KYGKEFVNLIKQFV 620