Pairwise Alignments

Query, 335 a.a., LacI family transcription regulator (RefSeq) from Shewanella amazonensis SB2B

Subject, 340 a.a., LacI family DNA-binding transcriptional regulator from Pseudomonas fluorescens SBW25-INTG

 Score =  177 bits (449), Expect = 3e-49
 Identities = 112/336 (33%), Positives = 175/336 (52%), Gaps = 7/336 (2%)

Query: 1   MTNIKKVSELAGVSTATVSRTLKSPERVSEQTRAKVMQAVKQAGYRPNWMATSVKTGKSN 60
           M  IK V+ LAG+S  TVS  +     VSE  R KV  A+KQ  Y P+ +A S+K   + 
Sbjct: 1   MATIKDVAALAGISYTTVSHVVNKTRPVSEPVRIKVEAAIKQLDYVPSAVARSLKAKTTA 60

Query: 61  AIVVLVPNLVNPFFMRIIEGIEQAAQEKGYCVLLGDTQGLQAREHEYASMVLTNRADGLI 120
            I +LVPN +NP+F  +  GIE   +  GYCV+L ++     ++  Y  ++L  R DGLI
Sbjct: 61  TIGLLVPNSLNPYFAELARGIEDYCERNGYCVILCNSDDNAEKQRSYLRVLLEKRIDGLI 120

Query: 121 QLDHSFPFSDNDADLAAT-IPMVSVCERIEGDRKYPFIELDNHAAGRALAHHLIGFGHKH 179
                   S   A L+A   PMV V   ++G      + +D+         HL+  GH+ 
Sbjct: 121 VTSVGGDDSGLAAGLSAVRTPMVIVDRALDG-IDVDLVRIDHEEGAYLATRHLLELGHRD 179

Query: 180 FGIIAGQRRSQIHHDRLTGIMSVLQGEGIDFKEDMLVGSSYSIETGIEGARELLSRNPRP 239
              I G   +++   RL G    LQ  G+    +    S ++   G   A +LL+ NP P
Sbjct: 180 IACIGGPAHTRVAQMRLAGYHRALQEAGVAVAANRTQESDFTSTGGYTAAVQLLANNP-P 238

Query: 240 SAIFCFNDDIAIGAMFEIKSQGLKIPDDISVTGFDNVKVSAYMDPPLTTIDQPAYEMGRN 299
           SAIF  ND I  G +     + +++P ++SV GFD++++  Y+ P LTT+ Q   ++G  
Sbjct: 239 SAIFASNDMIGFGVLRAAAERNIRVPGELSVIGFDDIQMGRYVYPALTTVGQSIVQLGET 298

Query: 300 AVEVLVQQI--NRLPLARSRVIMPFHLLERGSTGPL 333
           A E+L+++I   +LP+ + R++ P  +L R ST P+
Sbjct: 299 AAELLLRRIATPQLPIDQ-RIVTPSIVL-RESTAPV 332