Pairwise Alignments

Query, 365 a.a., tRNA (uracil-5-)-methyltransferase (RefSeq) from Shewanella amazonensis SB2B

Subject, 359 a.a., tRNA (Uracil54-C5-)-methyltransferase (EC 2.1.1.35) from Pseudomonas fluorescens FW300-N1B4

 Score =  335 bits (860), Expect = 9e-97
 Identities = 173/360 (48%), Positives = 238/360 (66%), Gaps = 5/360 (1%)

Query: 7   DPQQYEQQLEQKCQALTEAFAHYNPPALEVFPSAPAHYRMRCEFRVWHDGDDLYYCMFDN 66
           D Q Y  QLE+K   L +  A ++ P   VF S   ++R+R EFR+W +  + +Y MF  
Sbjct: 4   DSQAYAVQLEEKVTRLRDLLAPFDAPEPAVFDSPLKNFRLRAEFRLWREAGERHYAMFSL 63

Query: 67  VAKEK-VRTDQFLPASELINRMMPALLDELRPNRALRHKLFQVDFLSTLSGEILVSLLYH 125
             K   +  ++F  AS  IN++MP L    + + AL HKLFQV+FL+TL+G+ +++L YH
Sbjct: 64  EDKRTPILIEEFPIASLRINQLMPQLKAAWQASAALSHKLFQVEFLTTLAGDAMITLCYH 123

Query: 126 RQLDDQWLTEARALKARLGEHFKVDIIGRARKQKFVLDRDFVVESLDVDGKTLHYKQVEN 185
           R LD+ W   A  L A L     V IIGR++ ++ V+  D+VVE L+V G+T  Y+Q E 
Sbjct: 124 RPLDEHWHAAASKLAADLN----VSIIGRSKGKREVIGHDYVVEKLEVGGRTFSYRQPEG 179

Query: 186 SFTQPNAGVAVKMLEWALDATKQSSGDLLELYCGNGNFSIALAPNFGKVLATELAKPSVE 245
           +FTQPN  V  KML WA DA    S DLLELYCGNGNF++ LA    KVLATE++K SV 
Sbjct: 180 AFTQPNGTVNQKMLNWAYDALGDRSDDLLELYCGNGNFTLPLATRVRKVLATEISKTSVN 239

Query: 246 AAQYNIQVNKVSNLDIVRMSAEEFTEAMKGEKRFNRLGDIDLQSYQCNTIFVDPPRAGLD 305
           AA  N+  N V N+ +VR+SAEE TEA+   + F RL  IDL+SY+  ++FVDPPRAG+D
Sbjct: 240 AALSNLSENAVDNVTLVRLSAEELTEALNEVRPFRRLHGIDLKSYEFGSVFVDPPRAGMD 299

Query: 306 DETVKLVQGYENILYISCNPDTLNDNLKVLSETHEVVRFALFDQFPYTHHTEAGVMLKRR 365
            +T +L + ++NILYISCNP+TL  N+  L +TH + + A+FDQFP+THH E+GV+L RR
Sbjct: 300 PDTCELTRRFDNILYISCNPETLAANIAQLHDTHRITQCAMFDQFPWTHHMESGVLLTRR 359