Pairwise Alignments

Query, 365 a.a., tRNA (uracil-5-)-methyltransferase (RefSeq) from Shewanella amazonensis SB2B

Subject, 455 a.a., 23S rRNA (uracil-5-)-methyltransferase RumA from Synechococcus elongatus PCC 7942

 Score = 79.3 bits (194), Expect = 2e-19
 Identities = 94/383 (24%), Positives = 158/383 (41%), Gaps = 55/383 (14%)

Query: 11  YEQQLEQKCQALTEAFAHYNPPALEVFPSAPAHYRMRCEFRVWH-----DGDDLYYCMFD 65
           Y  Q+E K   + +A         EV P+  A Y +    +V +     D  ++    F 
Sbjct: 95  YPAQVEAKTVIVQDAMQRLGQLETEVQPTIAAPYPLGYRNKVSYPLRRSDRGEVQAGYFR 154

Query: 66  NVAKEKVRTDQFLPASELINRMMPAL-----------LDELRPNRALRHKLFQVDFLSTL 114
             +   +  +Q     + +N ++  +            DE   +R LRH   ++      
Sbjct: 155 KGSHRLINLNQCPVQDDRLNPLLAGIKADIAARDWPIYDEQTRSRGLRHLGLRI---GQR 211

Query: 115 SGEILVSLLY-HRQLDD------QWLTE---ARALKARLGEHFKVDIIGRARKQKFVLDR 164
           +GEIL++L+    QL +      QWLT+      +   L       I+G   +   +  R
Sbjct: 212 TGEILITLIATDDQLPEVEAQAEQWLTDYPNVVGVCLNLNPSHGNRILGD--ETHCLAGR 269

Query: 165 DFVVESLDVDGKTLHYKQVENSFTQPNAGVAVKMLEWALDATKQSSGDLLELYCGNGNFS 224
            +++E LD     L +     +F Q N   A ++L    D  +  S  L +LYCG G  +
Sbjct: 270 PYLIECLD----DLEFAIGPETFFQVNTEQAERLLPILKDFLR-GSDRLFDLYCGVGTLT 324

Query: 225 IALAPNFGKVLATELAKPSVEAAQYNIQVNKVSNLDIVRMSAEEFTEAMKGEKRFNRLGD 284
           + LA   G VL  E+   SV  AQ N   N +SN++  R  A E   A   E        
Sbjct: 325 LPLASEVGSVLGLEILPESVVQAQQNADRNGISNVEF-RAGAVEILLAQIPESP------ 377

Query: 285 IDLQSYQCNTIFVDPPRAGLDDETVKLVQGY--ENILYISCNPDTLNDNLKVL--SETHE 340
                   + + +DPPR G +   +++++    + I Y+SCNP TL  +L+ L   + + 
Sbjct: 378 --------DAVLLDPPRKGCEPAVIEVLRDRQPQRIAYVSCNPATLARDLQALCAGDRYR 429

Query: 341 VVRFALFDQFPYTHHTEAGVMLK 363
           ++     D FP T H E   +L+
Sbjct: 430 LLLVQPLDFFPQTAHVETVALLE 452