Pairwise Alignments

Query, 703 a.a., type II and III secretion system protein (RefSeq) from Shewanella amazonensis SB2B

Subject, 740 a.a., type II secretion system secretin GspD from Pseudomonas fluorescens SBW25-INTG

 Score =  127 bits (318), Expect = 3e-33
 Identities = 92/309 (29%), Positives = 142/309 (45%), Gaps = 41/309 (13%)

Query: 318 IMAHTDTNALVISAEPDQMRTLESVINQLDIRRAQVLVEAIIVEVAEGDDVGFGVQWAT- 376
           I A   +N L++   P Q + +ES I +LD    QV +E  I+EV    ++  GVQW   
Sbjct: 442 ITAQKSSNQLLVRTRPVQWKEIESAIKRLDNPPLQVQIETRILEVKLTGELDLGVQWYLG 501

Query: 377 ESGGGTQFNNLGPTIGEIGAGIWQARGEEASEVTTIDGNGNPIVSKNPEKRGDITLLAQA 436
              G +    +G T G  GA               + G G                    
Sbjct: 502 RLAGNSTSTTVGNTAGSQGA---------------LGGGG------------------AG 528

Query: 437 LGKVNGMAWGVAMGDFGALIQAVSSDTNSNVLATPSITTLDNQEAAFIVGDEVPVLTGAQ 496
           LG  + + +     +    + A+ ++  + VL+ PS+  ++NQ A   VGD +P+     
Sbjct: 529 LGAADSLFYSFVSSNLQVALHALETNGRTQVLSAPSLVVMNNQPAQIQVGDNIPISQTTV 588

Query: 497 NSSNGNSNPFQTVERKEVGVKLKVTPQINEGNAVKLAIEQEVSGINGK------TGVDVT 550
           N+   ++    +VE  + GV L V P+IN G  V + I+Q+VS    +      T  +  
Sbjct: 589 NTGTSDTT-LSSVEYVQTGVILDVVPRINPGGLVYMDIQQQVSDAQDQASSSNDTQNNPR 647

Query: 551 FATRRLTTTVMADSGQIVVLGGLINEEVQESVQKVPILGDIPLLGHLFKSSSSGKKKKNL 610
            +TR ++T V   SGQ V+LGGLI ++  ESV  VP LG IP L  LF ++S  K +  L
Sbjct: 648 ISTRSVSTQVAVQSGQTVLLGGLIKQDNAESVSAVPYLGRIPGLRWLFGNTSKSKDRTEL 707

Query: 611 MVFIKPTII 619
           +V I P +I
Sbjct: 708 IVLITPRVI 716



 Score = 28.9 bits (63), Expect = 0.001
 Identities = 42/212 (19%), Positives = 84/212 (39%), Gaps = 26/212 (12%)

Query: 137 PLYNSEAKQLAPLLRQLNDNAGGGNVVNYDPSNVLMLTGRAAVVNKLVEIVKRVDKQGDT 196
           P+   +A  +   L    DNA     +    +  ++L    AV  KLV  ++        
Sbjct: 144 PVNKQQALSILETLLSWTDNA-----MIKQGNRYVILPANQAVAGKLVPEMRVSQPSSGL 198

Query: 197 EVLVVPLQHASASEMVRIIDTLYRASANQAQLPGQAPKVVADERINAVVISGDEKSRQRV 256
              + PL++ SA+EM +++    R +A           ++ D   N + ++G  +     
Sbjct: 199 SARLFPLRYISATEMQKLLKPFARENA----------FLLVDPARNVLSLAGTPEELANY 248

Query: 257 VELVKRLDAEQASTGNTKVRYLRYAKAEDLVEVLTGFAQKLEESKDNGAQQASGKRRSQI 316
            + +   D +     +  V  L+ A   +L+  L    QK+    D+G   A       +
Sbjct: 249 QDTIDTFDVDWLKGMSVGVFGLQRASVAELMPEL----QKM-FGPDSGMPLA-----GMV 298

Query: 317 NIMAHTDTNALV-ISAEPDQMRTLESVINQLD 347
             +    TN++V IS++P  +  +   I+ +D
Sbjct: 299 RFLPIERTNSVVAISSQPQYLSEVGDWIHTID 330