Pairwise Alignments

Query, 703 a.a., type II and III secretion system protein (RefSeq) from Shewanella amazonensis SB2B

Subject, 658 a.a., GspD family T2SS secretin variant XcpQ from Pseudomonas aeruginosa PA14

 Score =  375 bits (964), Expect = e-108
 Identities = 219/624 (35%), Positives = 365/624 (58%), Gaps = 57/624 (9%)

Query: 29  ASNEQLAP---SFKNAEIQEFINTVGKRLNKTIIVDPTIRGKINVRSYDNLTEDQYFQFF 85
           A N+Q A    + K+A+I+EFI+ + +   +T +VDP ++G+++V S   L+  + +Q F
Sbjct: 45  AGNQQEAHWTINLKDADIREFIDQISEITGETFVVDPRVKGQVSVVSKAQLSLSEVYQLF 104

Query: 86  LNVLQVYGYAVVEMENGVLKVIKDKDAKTSNIRVADDSAPGLGDELVTRIVPLYNSEAKQ 145
           L+V+  +G+ VV  +    +++ + +AKT        SAP   D L TR++ +  S   +
Sbjct: 105 LSVMSTHGFTVVA-QGDQARIVPNAEAKTE--AGGGQSAP---DRLETRVIQVQQSPVSE 158

Query: 146 LAPLLRQLNDNAGGGNVVNYDPSNVLMLTGRAAVVNKLVEIVKRVDKQGDTEVLVVPLQH 205
           L PL+R L    G  ++     +N L+++ R+A + ++ ++++++D++G  +  V+ L++
Sbjct: 159 LIPLIRPLVPQYG--HLAAVPSANALIISDRSANIARIEDVIRQLDQKGSHDYSVINLRY 216

Query: 206 ASASEMVRIIDTLYRASANQAQLPGQA-PKVVADERINAVVISGDEKSRQRVVELVKRLD 264
               +   +++     + ++ Q  G A  +V+AD R N ++I G  ++R ++V+L + LD
Sbjct: 217 GWVMDAAEVLNN----AMSRGQAKGAAGAQVIADARTNRLIILGPPQARAKLVQLAQSLD 272

Query: 265 AEQASTGNTKVRYLRYAKAEDLVEVLTGFAQKLEESKDNGAQQASGKRRSQINIMAHTDT 324
              A + NT+V  LR+  A+ L E L   ++ ++ +   G +Q  G R S I I A   T
Sbjct: 273 TPTARSANTRVIRLRHNDAKTLAETLGQISEGMKNNGGQGGEQTGGGRPSNILIRADEST 332

Query: 325 NALVISAEPDQMRTLESVINQLDIRRAQVLVEAIIVEVAEGDDVGFGVQWATESGG---- 380
           NALV+ A+PD +  LE ++ QLD+ RAQVLVEA IVE++       GVQWA   GG    
Sbjct: 333 NALVLLADPDTVNALEDIVRQLDVPRAQVLVEAAIVEISGDIQDAVGVQWAINKGGMGGT 392

Query: 381 GTQFNNLGPTIGEIGAGIWQARGEEASEVTTIDGNGNPIVSKNPEKRGDITLLAQALGKV 440
            T F N G +IG +              + +++ N      K PE   D           
Sbjct: 393 KTNFANTGLSIGTL--------------LQSLESN------KAPESIPD----------- 421

Query: 441 NGMAWGVAMGDFGALIQAVSSDTNSNVLATPSITTLDNQEAAFIVGDEVPVLTGA-QNSS 499
            G   G+    FGAL+ A+S++T SN+L+TPS+ TLDNQ+A  +VG  VP  TG+   +S
Sbjct: 422 -GAIVGIGSSSFGALVTALSANTKSNLLSTPSLLTLDNQKAEILVGQNVPFQTGSYTTNS 480

Query: 500 NGNSNPFQTVERKEVGVKLKVTPQINEGNAVKLAIEQEVSGI----NGKTGVDVTFATRR 555
            G+SNPF TVERK++GV LKVTP IN+G A++L IEQE+S +      +   D+  + R 
Sbjct: 481 EGSSNPFTTVERKDIGVSLKVTPHINDGAALRLEIEQEISALLPNAQQRNNTDLITSKRS 540

Query: 556 LTTTVMADSGQIVVLGGLINEEVQESVQKVPILGDIPLLGHLFKSSSSGKKKKNLMVFIK 615
           + +T++A++GQ++V+GGLI ++V ++  KVP+LGDIP LG LF+S+     K+NLMVF++
Sbjct: 541 IKSTILAENGQVIVIGGLIQDDVSQAESKVPLLGDIPFLGRLFRSTKDTHTKRNLMVFLR 600

Query: 616 PTIIRDGITMEGIAGRKYNYFRAL 639
           PT++RD   +  ++G+KY+  R +
Sbjct: 601 PTVVRDSAGLAALSGKKYSDIRVI 624



 Score = 28.9 bits (63), Expect = 8e-04
 Identities = 31/130 (23%), Positives = 58/130 (44%), Gaps = 10/130 (7%)

Query: 292 GFAQKLEESKDNGAQQASGKRRSQINIMAHTDTNALVISAEPDQMRTLESVINQLDIRRA 351
           G A +LE  ++  A   + ++R+  +++    +    I AE  Q+  +  +I Q D+ +A
Sbjct: 508 GAALRLEIEQEISALLPNAQQRNNTDLITSKRSIKSTILAENGQVIVIGGLI-QDDVSQA 566

Query: 352 QVLVEAIIVEVAEGDDVGFGVQWATESGGGTQFNN---LGPTIGEIGAGIWQARGEEASE 408
           +  V  +      GD    G  + +     T+ N    L PT+    AG+    G++ S+
Sbjct: 567 ESKVPLL------GDIPFLGRLFRSTKDTHTKRNLMVFLRPTVVRDSAGLAALSGKKYSD 620

Query: 409 VTTIDGNGNP 418
           +  IDG   P
Sbjct: 621 IRVIDGTRGP 630