Pairwise Alignments

Query, 703 a.a., type II and III secretion system protein (RefSeq) from Shewanella amazonensis SB2B

Subject, 663 a.a., type II and III secretion system protein from Marinobacter adhaerens HP15

 Score =  338 bits (867), Expect = 5e-97
 Identities = 216/659 (32%), Positives = 356/659 (54%), Gaps = 45/659 (6%)

Query: 2   NNQGFRRKL--IASLVAGTVLLSPAIAWSASNEQLAPSFKNAEIQEFINTVGKRLNKTII 59
           N Q +  K+  + ++V   +L   ++A     E    + K+A+I+ F+  V      + +
Sbjct: 12  NRQMYNHKINVLRAIVLLFLLPFMSMAHGQEAETWRLNLKDADIRAFVTQVADITGYSFV 71

Query: 60  VDPTIRGKINVRSYDNLTEDQYFQFFLNVLQVYGYAVVEMENGVLKVIKDKDAKTSNIRV 119
           VDP ++GK+ V S   + +D+ +  FL VL V+G+  +     V+KV++  DAK S   +
Sbjct: 72  VDPRVKGKVTVLSSAPMNKDEIYDLFLAVLNVHGFTAIPGAE-VIKVVQQVDAKQS-AEI 129

Query: 120 ADDSAPGLGDELVTRIVPLYNSEAKQLAPLLRQLNDNAGGGNVVNYDPSNVLMLTGRAAV 179
            +       ++L+TR++ + N+ A +L P+LR L   A  G++     +N L+++  ++ 
Sbjct: 130 LERFPETPSEQLITRVIQIDNANALELVPILRPLV--AKYGHLAGVAAANALIISDHSSN 187

Query: 180 VNKLVEIVKRVDKQGDTEVLVVPLQHASASEMVRIIDTLYRASANQAQLPGQAPK--VVA 237
           + ++ +IV+ +D     EV V+ LQ A   +MV ++  L      +A     A K  V A
Sbjct: 188 IQRIEQIVRELDSPSKYEVEVIQLQEAWVGDMVTLLQELAPDELGRAGGDNAARKYSVTA 247

Query: 238 DERINAVVISGDEKSRQRVVELVKRLDAEQASTGNTKVRYLRYAKAEDLVEVLTGFAQKL 297
           DER N +++ GDE  R+++  L+++LD   A+ G TKV  L++A A++L E+L G   +L
Sbjct: 248 DERSNRLILRGDETFREKMRGLIRQLDQPSATGGTTKVLRLKHADAKNLTEILKGVMGEL 307

Query: 298 EESKDNGAQQASGKRRSQINIMAHTDTNALVISAEPDQMRTLESVINQLDIRRAQVLVEA 357
            +         + K +S   + A    NALV+  EP  M+  E ++  LD+RRAQV++EA
Sbjct: 308 VKEGTGSGSGGAAKPQSSFAVFADEGLNALVVRGEPSLMQEAEQIVAALDVRRAQVMIEA 367

Query: 358 IIVEVAE--GDDVGFGVQWATESG-----GGTQFNNLGPTIGEIGAGIWQARGEEASEVT 410
            IVE+++  G D+G  V    ESG      GT F N+G ++GE+ + I    G   +  T
Sbjct: 368 AIVEISDELGQDLGVQVAVGDESGESTPVAGTNFGNVGRSLGEVLSAI--LTGSAITPAT 425

Query: 411 TIDGNGNPIVSKNPEKRGDITLLAQALGKVNGMAWGVAMGDFGALIQAVSSDTNSNVLAT 470
                            G IT+ A    + NG++WGV       L+QA+S+   +N+L+T
Sbjct: 426 -----------------GGITIGAGQRNE-NGVSWGV-------LLQALSTSAAANLLST 460

Query: 471 PSITTLDNQEAAFIVGDEVPVLTGAQN-SSNGNSNPFQTVERKEVGVKLKVTPQINEGNA 529
           PSI TLDNQE+  IVG  VP  TG    + +G +NPF T+ER+++G+ LKVTP I+    
Sbjct: 461 PSIITLDNQESEIIVGQNVPFRTGQSTVTGDGTTNPFTTIERRDIGLTLKVTPTISADGL 520

Query: 530 VKLAIEQEVSGI--NGKTGVDVTFATRRLTTTVMADSGQIVVLGGLINEEVQESVQKVPI 587
           V+L +EQ    +  + +   D+    R + TTV+AD G+ +VLGGL  ++ Q +  KVP+
Sbjct: 521 VRLVVEQTTESVADSIENASDIVTNKREIKTTVLADDGETIVLGGLTRDDYQVNKSKVPL 580

Query: 588 LGDIPLLGHLFKSSSSGKKKKNLMVFIKPTIIRDGITMEGIAGRKYNYFRALQLEQQER 646
           LGDIP +G LF S S  + K+NL+VF++P I+            K+N    + L  +E+
Sbjct: 581 LGDIPFVGRLFSSESERRVKRNLLVFLRPKIMLGKEEAVAATSDKFNQLWDVNLNIREK 639