Pairwise Alignments

Query, 541 a.a., inner membrane protein, 60 kDa (RefSeq) from Shewanella amazonensis SB2B

Subject, 556 a.a., Preprotein translocase subunit YidC from Pseudomonas stutzeri RCH2

 Score =  466 bits (1200), Expect = e-136
 Identities = 257/556 (46%), Positives = 348/556 (62%), Gaps = 26/556 (4%)

Query: 1   MESQRNLLLIGLLFVSFLLWQQWESDKAPKPATEVTAAAQIHDQAI----------NSDV 50
           M+ +R++LL+ L  V++L+  QW  D         TA +Q     +          N+D 
Sbjct: 1   MDIKRSILLVALAVVAYLMVLQWNQDYGQAALPAETAQSQPGVPTLPDSPSATSEGNADD 60

Query: 51  PTADAG------VPATVAATQNLILVTTDQLEIQINPVGGDIVHAALLTHKLEQNE-EAP 103
             A AG      +PAT  ++Q LI V TD L++ I+P GGDIV   L      Q+  + P
Sbjct: 61  VPAVAGQQQASALPATAPSSQ-LIRVRTDVLDVAIDPRGGDIVELHLPQFPRRQDRPDVP 119

Query: 104 FVLLEQKNNFSYIAQSGLIGRDGIDSAASGRAKFAAAADAYTLADGQDTLEVPLTLTTDA 163
           F L E+    +Y AQSGLIG DG D A SGR ++++    Y LA+GQD L V L  + D 
Sbjct: 120 FQLFERSGERTYEAQSGLIG-DGPDQA-SGRPQYSSEKTEYQLAEGQDQLVVDLNYSAD- 176

Query: 164 GVTFTKVFVFKRGQFDVGVDYRVANNSAAPVQVQMYGQIKQTITASESSMMMP---TYRG 220
           GV + K F  +RG + + V+Y + N S  P    ++GQ+K+  +   SS       TY G
Sbjct: 177 GVNYIKRFTLERGNYALKVNYLIDNQSEQPWTGYLFGQLKRDKSGDPSSSTATGTATYLG 236

Query: 221 AAFSTADVRYEKYSFDDMGKKDLEEPTLGGWVAMLQHYFVSAWVPAAADKNTLFTSVSAG 280
           AA  T D  Y K S  DM  K+L E   GGW+A LQHYFV+AW+P A D N + T   + 
Sbjct: 237 AALWTKDEPYRKVSMGDMDDKNLRETVQGGWIAWLQHYFVTAWIPQAEDTNQVQTRKDSQ 296

Query: 281 GLANIGFKGSVHDVAPGATETISATFYVGPKDQAALSALSDTLNLVVDYGFLWWLAVPIH 340
           G   IGF G    VA GA     AT Y GPK Q  L  LS  L L VDYG LW++A PI 
Sbjct: 297 GNYIIGFTGPAVTVAAGAQGETGATLYAGPKSQDKLEELSPGLRLTVDYGILWFIAQPIF 356

Query: 341 WILMFFQSLVHNWGVAIILVTLTVRGLLYPLTKAQYVSMAKMRNLQPKLQDLKDRFGDDR 400
           W+L    +L+ NWG +II++T+ ++   +PL+ A Y SMA+MR + PK+Q LK++FGDDR
Sbjct: 357 WLLENIHALLGNWGWSIIVLTIIIKLAFFPLSAASYRSMARMRAVSPKMQALKEQFGDDR 416

Query: 401 QKMGQAMMELYKKEKVNPMGGCLPILLQMPIFIALYWVLLESVELRHAPFMLWIQDLSVQ 460
           QKM QAMMELYKKEK+NP+GGCLPIL+QMP+F+ALYWVLLESVE+R AP+M WI DLS++
Sbjct: 417 QKMSQAMMELYKKEKINPLGGCLPILVQMPVFLALYWVLLESVEMRQAPWMFWITDLSIK 476

Query: 461 DPYYVLPLLMGASMWAMQKMQPMAPNMDPMQQKMLQWMPMIFTVFFLWFPAGLVLYWLVG 520
           DP+++LP++MG +M+  Q++ P  P  DPMQ ++++ +P+IFT FFLWFPAGLVLYW+V 
Sbjct: 477 DPFFILPIIMGVTMFIQQQLNPTPP--DPMQARVMKLLPIIFTFFFLWFPAGLVLYWVVN 534

Query: 521 NLVAITQQKIIYASLE 536
           N+++I QQ  I   +E
Sbjct: 535 NVLSIAQQWYITRQIE 550