Pairwise Alignments

Query, 541 a.a., inner membrane protein, 60 kDa (RefSeq) from Shewanella amazonensis SB2B

Subject, 595 a.a., inner membrane protein translocase component YidC from Sinorhizobium meliloti 1021

 Score =  248 bits (634), Expect = 4e-70
 Identities = 177/592 (29%), Positives = 287/592 (48%), Gaps = 68/592 (11%)

Query: 1   MESQRNLLL-IGLLFVSFLLWQQWESDKAPKPATEVTAAAQIHDQAINSDVPTADAGVP- 58
           ME+ RN  + I L  +  + WQ +    +PK   +  AA Q          P A    P 
Sbjct: 2   MENNRNYFVAIALSVLILIAWQFFYV--SPKMEKDRIAAEQAQQAQQTQQQPGAQPAAPG 59

Query: 59  ------ATVAATQNL---------ILVTTDQLEIQINPVGGDIVHAALLTHKLEQNEEAP 103
                 A  +A ++          + + T  L   IN  G       L  ++   + ++P
Sbjct: 60  QALPGGAIPSAGESRDQAIGKSARVAIDTPALSGSINLTGARFDDLKLKGYRETVDPKSP 119

Query: 104 FVLL--EQKNNFSYIAQSGLIGRDGIDSAASGRAKFAAAADAYTLADGQD-TLEVPLTL- 159
            + L    +    Y  + G IG D   S    +         +TL+ G   T   P+TL 
Sbjct: 120 VITLFSPAETADGYFTEIGYIGSDATGSVPGPQT-------TWTLSGGDKLTPSTPVTLS 172

Query: 160 -TTDAGVTFTK-VFVFKRGQFDVGVDYRVANNSAAPVQVQMYGQIKQTITASESSMMMPT 217
            T D G+TF + + V  R  F V VD  + N +AAPV +  YG++ +    +  S+ +  
Sbjct: 173 YTNDKGITFARTISVDDRYMFQV-VD-SIKNETAAPVSLSSYGRVTRFNKPTTPSIYV-L 229

Query: 218 YRGAAFSTADVRYEKYSFDDMGKKDLEEP--TLGGWVAMLQHYFVSAWVPAAADKNTLFT 275
           + G      +   ++  +  +   +  EP  + GGW+ +   Y+ +  VP  A    +  
Sbjct: 230 HEGFVGVAGEHGLQEVGYSKVEDDEPVEPGKSTGGWLGITDKYWAATIVPPQATPFDIRF 289

Query: 276 SVSAGGLANI--GFKGSVHDVAPGATETISATFYVGPK-----DQAALSALSDTLNLVVD 328
           S  A G       +K     VAPG +  +    + G K     D   ++      + ++D
Sbjct: 290 SHFADGRPRYQSDYKSDAVTVAPGQSVELKNLVFAGAKEVPVVDNYEVAYSIPNFDKLID 349

Query: 329 YGFLWWLAVPIHWILMFFQSLVHNWGVAIILVTLTVRGLLYPLTKAQYVSMAKMRNLQPK 388
           +G+ +++  P+  ++ FF  L  N+G+AI++ T+ V+ + +PL   QY SMA M+ +QPK
Sbjct: 350 WGWFYFITKPMFKMMDFFFRLFGNFGIAILITTIVVKLIFFPLANKQYASMANMKKVQPK 409

Query: 389 LQDLKDRFGDDRQKMGQAMMELYKKEKVNPMGGCLPILLQMPIFIALYWVLLESVELRHA 448
           +++LK +FGDDR  + QAMM+LYK+EK+NP+ GC PIL+Q+P+F ALY V+  ++E+RHA
Sbjct: 410 MEELKKKFGDDRMGLQQAMMQLYKEEKINPLAGCWPILIQIPVFFALYKVIYVTIEMRHA 469

Query: 449 PFMLWIQDLSVQDPYYVL-------------------PLLMGASMWAMQKMQPMAPNMDP 489
           PF  WIQDLS  DP  ++                   P++MG +M+   +M P  P  DP
Sbjct: 470 PFFGWIQDLSAPDPTTIINLFGLLPFEGPAFLHLGIWPIIMGVTMFLQMRMNPTPP--DP 527

Query: 490 MQQKMLQWMPMIFTVFFLWFPAGLVLYWLVGNLVAITQQKIIYASLEKKGLK 541
            Q  +  WMP++FT     FPAGLV+YW   N ++I QQ II   ++++G+K
Sbjct: 528 TQAMLFTWMPVVFTFMLASFPAGLVIYWAWNNTLSILQQGII---MKRQGVK 576