Pairwise Alignments

Query, 541 a.a., inner membrane protein, 60 kDa (RefSeq) from Shewanella amazonensis SB2B

Subject, 595 a.a., 60 kDa inner membrane insertion protein (NCBI) from Rhodospirillum rubrum S1H

 Score =  218 bits (554), Expect = 7e-61
 Identities = 159/549 (28%), Positives = 256/549 (46%), Gaps = 54/549 (9%)

Query: 31  PATEVTAAAQIHDQAINSDVPTADAGVPATVAATQNLIL---------VTTDQLEIQINP 81
           P     AA Q+  Q   + VPT     P   + ++   L         + T +L   I  
Sbjct: 59  PGQSPVAAPQVPAQP-GAAVPTPGGMTPGAASLSREEALAADISPRIGIDTARLHGSIRL 117

Query: 82  VGGDIVHAALLTHKLEQNEEAPFVLLEQKNN--FSYIAQSGLIGRDGIDSAASGRAKFAA 139
            G  I   +L+ ++   + ++P + L         Y A+ G +       A +   K   
Sbjct: 118 RGARIDDLSLVDYRETVDPQSPEISLLSPPGAPLPYYAEFGWV-------AGTPGVKVPD 170

Query: 140 AADAYTLADGQDTLEVPLTLTTD--AGVTFTKVFVFKRGQFDVGVDYRVANNSAAPVQVQ 197
           A   +    G   ++ P+TLT D   G+ F +        F   +   V N  A  V + 
Sbjct: 171 ADTLWQADRGALGVDAPVTLTWDNGEGLRFIRKIAIDH-DFMFSITQAVENTGAGAVTLF 229

Query: 198 MYGQIKQTITASESSMMMPTYRGAAFSTADVRYEKYS-FDDMGKKDLEEPTLGGWVAMLQ 256
            YG + +  T +  +  +            ++  KYS   D G  +++  + GGW+ +  
Sbjct: 230 PYGLVSRINTPALLNYYILHEGPLGVFDGTLKEVKYSALKDDG--EVKHTSTGGWMGITD 287

Query: 257 HYFVSAWVPAAADKNT---LFTSVSAGGLANIGFKGSVHDVAPGATETISATFYVGPKDQ 313
            Y+++A V   +   T   L+            F G+   V PG     S   + G K+ 
Sbjct: 288 KYWLTALVTDQSMPVTGRFLYQPRDGRDGYQADFLGAAFTVEPGGRIETSNHLFSGAKEV 347

Query: 314 AALSALSDTL-----NLVVDYGFLWWLAVPIHWILMFFQSLVHNWGVAIILVTLTVRGLL 368
             L   +D L     +L +D+G+ +++  P    + F   ++ N G+AI+  T+ ++ + 
Sbjct: 348 KLLDRYTDELGIKNFDLAIDFGWFYFMTKPFFLSIQFLHGILGNMGLAILAFTVVLKLVF 407

Query: 369 YPLTKAQYVSMAKMRNLQPKLQDLKDRFGDDRQKMGQAMMELYKKEKVNPMGGCLPILLQ 428
           +PL    Y SM+KM+ LQP+L+ L++RF DDR ++ Q MM LYKKE+VNP+ GCLPI++Q
Sbjct: 408 FPLANKSYRSMSKMKLLQPELKKLQERFKDDRARLNQEMMSLYKKEQVNPLSGCLPIVIQ 467

Query: 429 MPIFIALYWVLLESVELRHAPFMLWIQDLSVQDPYYVL-------------------PLL 469
           +P+F ALY VL  S+E+RH PF  WI+DL+  DP  V                    PL+
Sbjct: 468 IPVFFALYKVLFVSIEMRHEPFYGWIRDLAAPDPTTVFNLFGLIPWDPPNMLMLGAWPLI 527

Query: 470 MGASMWAMQKMQPMAPNMDPMQQKMLQWMPMIFTVFFLWFPAGLVLYWLVGNLVAITQQK 529
           MG +MW  QK+ P     DP Q K++ ++P++FT     F AGLV+YW   NL++ITQQ 
Sbjct: 528 MGVTMWMQQKLNPTP--ADPTQAKIMMFLPIMFTFMLAHFAAGLVIYWTWNNLLSITQQW 585

Query: 530 IIYASLEKK 538
           +I   +  K
Sbjct: 586 VIMKRMGAK 594