Pairwise Alignments

Query, 516 a.a., NusA antitermination factor (NCBI) from Rhodospirillum rubrum S1H

Subject, 495 a.a., transcription termination factor NusA from Escherichia coli Nissle 1917

 Score =  419 bits (1076), Expect = e-121
 Identities = 220/491 (44%), Positives = 329/491 (67%), Gaps = 3/491 (0%)

Query: 11  ELVQVADTVARDKSIEREEVFAAMEQAIQKAGRSKYGHEHDIRARIDRKTGEIRLARYIE 70
           E++ V + V+ +K++ RE++F A+E A+  A + KY  E D+R +IDRK+G+    R   
Sbjct: 4   EILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVQIDRKSGDFDTFRRWL 63

Query: 71  VVEEVENEFTQITLAGAKRKKADIELGEFLVDPLPPIDFGRIAAQTAKQVIVQKVRDAER 130
           VV+EV     +ITL  A+ +   + LG+++ D +  + F RI  QTAKQVIVQKVR+AER
Sbjct: 64  VVDEVTQPTKEITLEAARYEDESLNLGDYVEDQIESVTFDRITTQTAKQVIVQKVREAER 123

Query: 131 ERQFAEYKDRLGEIINGLVKRVEFGNVIVDMGR-AEALLRRDEVIPREHFKNGDRIRAYI 189
                ++++  GEII G+VK+V   N+ +D+G  AEA++ R++++PRE+F+ GDR+R  +
Sbjct: 124 AMVVDQFREHEGEIITGVVKKVNRDNISLDLGNNAEAVILREDMLPRENFRPGDRVRGVL 183

Query: 190 MDVRQEPRGPQIFLSRTHEQFMAKLFAQEVPEIYDGIIEIKSVARDPGSRAKIAVLSNDH 249
             VR E RG Q+F++R+  + + +LF  EVPEI + +IEIK+ ARDPGSRAKIAV +ND 
Sbjct: 184 YSVRPEARGAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAARDPGSRAKIAVKTNDK 243

Query: 250 AIDPVGACVGMRGSRVQAVVAELQGEKIDIIQWATDPATFVVNALAPAEVAKVVLDEEAN 309
            IDPVGACVGMRG+RVQAV  EL GE+IDI+ W  +PA FV+NA+APA+VA +V+DE+ +
Sbjct: 244 RIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADVASIVVDEDKH 303

Query: 310 RIEVVVPDEQLSLAIGRRGQNVRLASKLTGWDIDILTEAEESERRQDEFRIRTQAFIEAL 369
            +++ V    L+ AIGR GQNVRLAS+L+GW+++++T  +   + Q E       F + L
Sbjct: 304 TMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTVDDLQAKHQAEAHAAIDTFTKYL 363

Query: 370 DVDDVIAHLLVTEGFTTVEDVAFVAIAELSEIEGFDEDVASELQNRAQVFLAERERLNEE 429
           D+D+  A +LV EGF+T+E++A+V + EL EIEG DE     L+ RA+  LA   +  EE
Sbjct: 364 DIDEDFATVLVEEGFSTLEELAYVPMKELLEIEGLDEPTVEALRERAKNALATIAQAQEE 423

Query: 430 RRKELGVVDEMAEIEGLTAAMLVALGEKGVKTLDDLGDLASDELIEIVGGLNEDDANAVI 489
              +    D++  +EG+   +   L  +GV TL+DL +   D+L +I  GL ++ A A+I
Sbjct: 424 SLGDNKPADDLLNLEGVDRDLAFKLAARGVCTLEDLAEQGIDDLADI-EGLTDEKAGALI 482

Query: 490 MAAR-AHWFGE 499
           MAAR   WFG+
Sbjct: 483 MAARNICWFGD 493