Pairwise Alignments

Query, 516 a.a., NusA antitermination factor (NCBI) from Rhodospirillum rubrum S1H

Subject, 544 a.a., NusA antitermination factor (RefSeq) from Dinoroseobacter shibae DFL-12

 Score =  561 bits (1447), Expect = e-164
 Identities = 304/480 (63%), Positives = 365/480 (76%), Gaps = 5/480 (1%)

Query: 11  ELVQVADTVARDKSIEREEVFAAMEQAIQKAGRSKYGHEHDIRARIDRKTGEIRLARYIE 70
           EL+Q A+ VAR+K I+   V  AME+++ +A +S+YG E DIR  IDRKTG     R   
Sbjct: 10  ELLQTAEAVAREKMIDPGLVIEAMEESLARAAKSRYGSEMDIRVSIDRKTGVATFTRVRT 69

Query: 71  VVE--EVENEFTQITLAGAKRKKADIELGEFLVDPLPPIDFGRIAAQTAKQVIVQKVRDA 128
           VVE  E+EN   ++T+  AK    D ++G+ +VD +PP++ GRIAAQ+AKQVI+QKVR+A
Sbjct: 70  VVEDEELENYQAELTVEQAKPYLDDPKVGDTIVDQVPPVEMGRIAAQSAKQVILQKVREA 129

Query: 129 ERERQFAEYKDRLGEIINGLVKRVEFGNVIVDMGRAEALLRRDEVIPREHFKNGDRIRAY 188
           ER+RQ+ E+KDR G IING+VKR E+GNVIVD+GR E +LRR+E I RE ++  DRIR Y
Sbjct: 130 ERDRQYEEFKDRAGTIINGVVKREEYGNVIVDIGRGEGVLRRNEKIGRESYRPNDRIRCY 189

Query: 189 IMDVRQEPRGPQIFLSRTHEQFMAKLFAQEVPEIYDGIIEIKSVARDPGSRAKIAVLSND 248
           I DVR+E RGPQIFLSRT  +FMA+LF  EVPEIYDGIIEIK+VARDPGSRAKIAV+S D
Sbjct: 190 IKDVRREVRGPQIFLSRTAPEFMAELFKMEVPEIYDGIIEIKAVARDPGSRAKIAVISYD 249

Query: 249 HAIDPVGACVGMRGSRVQAVVAELQGEKIDIIQWATDPATFVVNALAPAEVAKVVLDEEA 308
            +IDPVGACVGMRGSRVQAVV ELQGEKIDII W  D  TF+VNAL PAEV+KVVLDE+A
Sbjct: 250 GSIDPVGACVGMRGSRVQAVVNELQGEKIDIIPWNEDQPTFLVNALQPAEVSKVVLDEDA 309

Query: 309 NRIEVVVPDEQLSLAIGRRGQNVRLASKLTGWDIDILTEAEESERRQDEFRIRTQAFIEA 368
            RIEVVVPDEQLSLAIGRRGQNVRLAS+LTG DIDI+TEA+ESERRQ EF  RT  F+EA
Sbjct: 310 ERIEVVVPDEQLSLAIGRRGQNVRLASQLTGLDIDIMTEAQESERRQAEFAERTNMFVEA 369

Query: 369 LDVDDVIAHLLVTEGFTTVEDVAFVAIAELSEIEGFDEDVASELQNRAQVFLAERERLNE 428
           LDVD+V+A LLV+EGFT +E+VA+V   EL  I+GFDED A ELQ RA+ FL E+ +   
Sbjct: 370 LDVDEVLAQLLVSEGFTNLEEVAYVEQEELLVIDGFDEDTAEELQTRAREFLEEQAKKAL 429

Query: 429 ERRKELGVVDEMAEIEGLTAAMLVALGEKGVKTLDDLGDLASDELIEIVGGLNEDDANAV 488
           ER +E+GV D + E EGLT  ML AL   GVKTL+D    A  EL    GG    D   V
Sbjct: 430 ERAREMGVEDSLVEFEGLTPQMLEALAADGVKTLEDFATCADWEL---AGGWTTVDGERV 486