Pairwise Alignments

Query, 328 a.a., Phage integrase (NCBI) from Rhodospirillum rubrum S1H

Subject, 302 a.a., site-specific tyrosine recombinase XerD from Vibrio cholerae E7946 ATCC 55056

 Score =  194 bits (492), Expect = 3e-54
 Identities = 124/297 (41%), Positives = 171/297 (57%), Gaps = 7/297 (2%)

Query: 23  EAFLEMMLAERGAARRTVEAYGRDLRDYAAFLREKGLDGLTVSRPTLRAYLATMAAAGLA 82
           E FL+ M  ERG A  TV +Y  DL     ++ +       +S   L+ Y + ++     
Sbjct: 13  EQFLDTMWFERGLAENTVASYRNDLSKLLEWMAQNQYRLDFISFAGLQEYQSWLSEQNYK 72

Query: 83  PRSQARKLSCLRQFHGFLVSEGRRPDDPTIGLDSPRLGRPLPRVLSEAEVDALLVAAEAG 142
           P S+AR LS +R+   +L  E  R DDP+  L SP+L   LP+ LSEA+V+ALL A +  
Sbjct: 73  PTSKARMLSAIRRLFQYLHREKVRADDPSALLVSPKLPTRLPKDLSEAQVEALLSAPDP- 131

Query: 143 EGARGLRARVLLELLYSTGLRVSELVSLPLSVANRDPETILVRGKGDKERLVPLGLPARA 202
           +    LR + +LELLY+TGLRV+ELVSL +   +     + V GKG KERLVP+G  A  
Sbjct: 132 QSPLELRDKAMLELLYATGLRVTELVSLTMENMSLRQGVVRVMGKGGKERLVPMGENAIE 191

Query: 203 ALRDWLIARPTTLPASGAARRRADRFLFPSSAAEGHLTRDGFAKMLGELALRAGIDPARV 262
            +  +L    + L        +    +FPSS  +  +TR  F   +   A+ AGID  ++
Sbjct: 192 WIETFLQQGRSLLLGE-----QTSDIVFPSSRGQ-QMTRQTFWHRIKHYAVIAGIDVEKL 245

Query: 263 SPHVLRHCFASHMLAHGADLRGVQTLLGHADIATTQIYTHVLDDRLTTLVRTAHPLA 319
           SPHVLRH FA+H+L +GADLR VQ LLGH+D++TTQIYTHV  +RL  L    HP A
Sbjct: 246 SPHVLRHAFATHLLNYGADLRVVQMLLGHSDLSTTQIYTHVATERLKQLHNEHHPRA 302