Pairwise Alignments

Query, 853 a.a., SecD export membrane protein (NCBI) from Rhodospirillum rubrum S1H

Subject, 622 a.a., Protein-export membrane protein SecD (TC 3.A.5.1.1) from Pseudomonas fluorescens FW300-N2E2

 Score =  301 bits (772), Expect = 6e-86
 Identities = 188/516 (36%), Positives = 282/516 (54%), Gaps = 51/516 (9%)

Query: 34  PDWLPQ---NRITLGLDLQGGSHLLLAVDMPAVIHDRLETMLESVRTNLRKDSLRYTGLA 90
           P WL +   + + LGLDL GG H LL VDM   +  R++     V++ LRK+ +RY  L 
Sbjct: 113 PQWLRKLGAHPMKLGLDLSGGVHFLLEVDMEKALDARMKVYEGDVKSLLRKERVRYRSLP 172

Query: 91  VRDRSVVFTLASADDIETARGALAPLVQPDEPGKPADYGLTFDGLTG----RIALADSGV 146
             D ++    +  D  E AR  +             D+ +    L G    R+A+  + +
Sbjct: 173 QLDGAIQLGFSDEDTREQARALIRKNFN--------DFDIVPADLNGQAVLRLAMTPAKL 224

Query: 147 QAWADKAAQQSIEIVRRRIDETGVNEPMIARQGADRILVQLPGVSDPGRIKRLLGQTAKM 206
               + + +Q++  VR R++E GV EP++ RQGA+RI+V+LPGV D    KR+LG+TA +
Sbjct: 225 AEIREYSIKQNLTTVRNRVNELGVAEPIVQRQGANRIVVELPGVQDTAEAKRILGKTANL 284

Query: 207 TFHMVGDRALGDGSVPAGYRLLPSADPARPGEKILVSRKVEVDGSHLTDAKPSFDQQNGQ 266
            F +  +     G+  A        +  RP  +I   R + + G  +TDA+  FD+Q G+
Sbjct: 285 EFRLAAE----PGASKATSESFEFREGGRPAAQI--ERGLIITGDQVTDAQAGFDEQ-GR 337

Query: 267 WVVSFSFDGQGARRFADVTKMAVGKPFAIVL----------------------------D 298
             V+   DG G    +  T+  VG+  A++                             +
Sbjct: 338 PQVNIRLDGHGGELMSRATRSNVGRSMAVIFIEQKPTTTYTKQVVNGVEKDVPVQTFKEE 397

Query: 299 DKVVSAPVIREPITGGRGQISGSFTAASANDLAVLLRAGALPAPLTVVEERTVGPDLGAD 358
            K++S   I+ P+ G + +I+G      +++LA+LLRAG L AP+   EERT+GP LGAD
Sbjct: 398 KKIISLATIQSPL-GSQFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGAD 456

Query: 359 SIRAGMIAISVGFVLVVAYMGIFYGLFGWFANVALVFNLAITLGALSLMQATLTLPGIAG 418
           +I  G+ A   G + V  ++   Y  FG  A VAL  N+ + L  +SL+ ATLTLPGIAG
Sbjct: 457 NITKGIDASLWGMLFVSLFIIAIYRFFGIIATVALAVNMVMLLALMSLLGATLTLPGIAG 516

Query: 419 LLLSLGMAVDANILINERIREEAKKGRGVAASMETGFKRAFATIFDSNITTLIKMAILFS 478
           ++L++GMAVDAN+LI  RIREE   G  +  ++  GF RAF  I D+N+TTL+   ILF+
Sbjct: 517 IVLTMGMAVDANVLIFSRIREEIAAGMTIQRAINEGFGRAFTAILDANLTTLLVGGILFA 576

Query: 479 IGVGTIRGFAVTISLGIIVSMFTAITVTRLLMVIWF 514
           +G G ++GFAVT+SLGI  SMFTAI VTR ++ + F
Sbjct: 577 MGTGPVKGFAVTMSLGIFTSMFTAIMVTRAMVNLIF 612