Pairwise Alignments

Query, 853 a.a., SecD export membrane protein (NCBI) from Rhodospirillum rubrum S1H

Subject, 622 a.a., Protein-export membrane protein SecD (TC 3.A.5.1.1) from Xanthomonas campestris pv. campestris strain 8004

 Score =  298 bits (762), Expect = 8e-85
 Identities = 191/521 (36%), Positives = 290/521 (55%), Gaps = 45/521 (8%)

Query: 32  SLPDWLPQ---NRITLGLDLQGGSHLLLAVDMPAVIHDRLETMLESVRTNLRKDSLRYTG 88
           ++PDWL +     + LGLDL GG H  + VD  A +  RLE   E +RT LR   + Y  
Sbjct: 115 TVPDWLAKLGGRPMVLGLDLVGGVHFAMQVDQKAALEKRLEGFAEDIRTTLRDGRIAYRS 174

Query: 89  LAVR-DRSVVFTLASADDIETARGALAPLVQPDEPGKPADYGLTFD--GLTGRIALADSG 145
           +  R D S+  +L      + AR ALA   QP          LT+D  G T  + + ++ 
Sbjct: 175 VERRGDNSIQVSLGEGASADAARTALAKS-QPT---------LTYDVSGQTISVKVPEAE 224

Query: 146 VQAWADKAAQQSIEIVRRRIDETGVNEPMIARQGADRILVQLPGVSDPGRIKRLLGQTAK 205
           ++  A  A +Q++  +R R++  GV+EP I RQG DRI+V+LPG+ D    KRL+G TA 
Sbjct: 225 LKQIASGAIEQNLTTLRNRVNALGVSEPTIQRQGEDRIVVELPGLQDTAEAKRLIGATAS 284

Query: 206 MTFHMV----GDRALGDGSVPAGYRLLPSADPARPGEKILVSRKVEVDGSHLTDAKPSFD 261
           + F  V     + A+  G++P   ++    D   P   +L++++  V G  +  A  S D
Sbjct: 285 LEFRAVVEGNAEDAVRSGTIPPEAKVYRLRDSNAP---VLLNKRALVTGDQMVSASVSND 341

Query: 262 QQNGQWVVSFSFDGQGARRFADVTKMAVGKPFAIV----------LDDKVVSAPVIREP- 310
           Q NG   V+ + +    +R  D T   VGK  ++V          +D K V +  ++E  
Sbjct: 342 Q-NGMPAVAVTLNNVAGQRMLDYTSANVGKLMSVVYIERIPTVTMVDGKEVRSVRVKEEA 400

Query: 311 --------ITGGRGQISGSFTAASANDLAVLLRAGALPAPLTVVEERTVGPDLGADSIRA 362
                   + G   Q +G      A +LA LL++G+L AP+  VEE  +GP LGA+++  
Sbjct: 401 LSPTRIAGVFGKNFQTTG-LEKTEAENLAKLLKSGSLAAPMDFVEEYVIGPSLGAENVER 459

Query: 363 GMIAISVGFVLVVAYMGIFYGLFGWFANVALVFNLAITLGALSLMQATLTLPGIAGLLLS 422
           G+ A+   FV  + +  ++Y +FG   +VAL+FNL I +  +SL  AT+TLPG AGL LS
Sbjct: 460 GVTAVVFSFVFTLVFFTVYYRMFGAITSVALLFNLLIVIAVMSLFGATMTLPGFAGLALS 519

Query: 423 LGMAVDANILINERIREEAKKGRGVAASMETGFKRAFATIFDSNITTLIKMAILFSIGVG 482
           +G++VDAN+LINERIREE + G    +++  G+++A  TI D+N+T LI    L++ G G
Sbjct: 520 VGLSVDANVLINERIREELRLGVPPKSAIVAGYEKAGGTILDANLTGLIVGVALYAFGTG 579

Query: 483 TIRGFAVTISLGIIVSMFTAITVTRLLMV-IWFRRTKPKSL 522
            ++GFA+T+ +GI  SMFTAITV+R L V I+  R K KS+
Sbjct: 580 PLKGFALTMIIGIFASMFTAITVSRALAVLIYGSRKKLKSV 620



 Score = 59.7 bits (143), Expect = 5e-13
 Identities = 37/166 (22%), Positives = 80/166 (48%), Gaps = 3/166 (1%)

Query: 654 VGASVSAELFQDGMMALGLAAIAMLIYIWFRFEWQFGVGAVVTMLLDVTKTVGFFAITGM 713
           +G S+ AE  + G+ A+  + +  L++    +   FG    V +L ++   +   ++ G 
Sbjct: 448 IGPSLGAENVERGVTAVVFSFVFTLVFFTVYYR-MFGAITSVALLFNLLIVIAVMSLFGA 506

Query: 714 QFNLTAIAAILTIMGYSINDKVVVYDRVRENLRLYRTMPLRQLIDKSINETLGRTVGTSL 773
              L   A +   +G S++  V++ +R+RE LRL   +P +  I     +  G  +  +L
Sbjct: 507 TMTLPGFAGLALSVGLSVDANVLINERIREELRL--GVPPKSAIVAGYEKAGGTILDANL 564

Query: 774 ATFLAIIPLAVFGGEALREFALVLLFGVVLATSSSVFIAAPLLLLL 819
              +  + L  FG   L+ FAL ++ G+  +  +++ ++  L +L+
Sbjct: 565 TGLIVGVALYAFGTGPLKGFALTMIIGIFASMFTAITVSRALAVLI 610